Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.0e-142 510.4 317 100.0
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 2.1e-55 220.3 204 55.4
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.6e-55 219.2 222 52.3
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 2.0e-45 187.2 219 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.7e-44 184.1 183 55.2
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.1e-43 181.4 184 54.9
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.9e-41 173.3 201 49.8
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 5.0e-41 172.6 208 46.2
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.5e-40 171.0 207 45.4
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.5e-40 171.0 226 44.7
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.9e-40 170.6 222 46.4
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.5e-40 170.2 211 47.4
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.5e-40 170.2 211 47.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.5e-40 170.2 211 47.4
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 5.5e-40 169.1 211 45.0
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 9.4e-40 168.3 211 44.5
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.4e-40 168.3 211 46.9
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.2e-39 167.9 196 45.9
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.1e-39 167.2 211 44.5
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 2.1e-39 167.2 221 44.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.7e-39 166.8 236 41.9
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 3.6e-39 166.4 201 47.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.6e-39 166.4 204 44.6
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 6.1e-39 165.6 198 45.5
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.0e-38 164.9 207 45.9
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.0e-38 164.9 210 43.8
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.8e-38 164.1 209 45.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 3.0e-38 163.3 235 41.3
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 4.0e-38 162.9 241 42.3
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 5.2e-38 162.5 207 47.8
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 5.2e-38 162.5 239 41.4
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 5.2e-38 162.5 243 39.1
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 8.8e-38 161.8 231 42.0
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 8.8e-38 161.8 242 42.6
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.2e-37 161.4 246 39.8
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.5e-37 161.0 207 43.0
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.5e-37 161.0 233 42.1
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.5e-37 161.0 190 48.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 2.0e-37 160.6 246 41.5
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.6e-37 160.2 194 46.4
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.6e-37 160.2 244 41.4
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.3e-37 159.8 210 43.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 4.4e-37 159.5 240 41.7
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 4.4e-37 159.5 198 45.5
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 7.5e-37 158.7 196 43.9
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 7.5e-37 158.7 246 41.9
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 7.5e-37 158.7 241 42.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.7e-37 158.3 199 45.7
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.7e-36 157.5 178 47.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.2e-36 157.1 242 40.1
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.8e-36 156.8 194 46.9
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 3.7e-36 156.4 196 42.9
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.7e-36 156.4 240 41.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 4.8e-36 156.0 196 42.9
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.8e-36 156.0 199 43.2
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 4.8e-36 156.0 201 43.8
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.1e-35 154.8 199 43.2
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.4e-35 154.5 212 40.6
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.4e-35 154.5 221 41.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.4e-35 154.5 196 41.8
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.4e-35 154.5 216 43.1
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.8e-35 154.1 210 41.0
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.8e-35 154.1 201 44.8
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.4e-35 153.7 182 45.6
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.4e-35 153.7 246 39.4
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.1e-35 153.3 245 41.6
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 7.0e-35 152.1 199 42.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 9.1e-35 151.8 196 41.3
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 9.1e-35 151.8 197 43.1
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.2e-34 151.4 241 41.1
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.2e-34 151.4 242 39.3
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.6e-34 151.0 196 40.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.0e-34 150.6 223 39.9
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 2.0e-34 150.6 210 40.5
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 2.0e-34 150.6 178 45.5
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.7e-34 150.2 242 38.8
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 5.9e-34 149.1 242 38.4
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.9e-34 149.1 242 39.3
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 5.9e-34 149.1 224 39.7
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 7.7e-34 148.7 204 40.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 7.7e-34 148.7 189 41.8
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 7.7e-34 148.7 204 40.7
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 7.7e-34 148.7 242 39.3
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 7.7e-34 148.7 243 39.5
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.0e-33 148.3 242 38.4
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.0e-33 148.3 242 38.0
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.3e-33 147.9 246 40.2
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.7e-33 147.5 238 39.5
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.7e-33 147.5 189 41.8
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.7e-33 147.5 204 40.7
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.2e-33 147.1 217 40.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 3.8e-33 146.4 217 41.5
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.8e-33 146.4 178 43.3
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 5.0e-33 146.0 243 37.9
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.5e-33 145.6 154 51.9
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 8.5e-33 145.2 240 39.6
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 8.5e-33 145.2 244 38.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.1e-32 144.8 245 36.7
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.5e-32 144.4 246 35.8
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.5e-32 144.4 88 80.7
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.9e-32 144.1 205 41.0
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.9e-32 144.1 246 35.8
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.2e-32 142.9 184 44.0
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 4.2e-32 142.9 254 37.0
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.2e-32 142.9 197 40.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 7.2e-32 142.1 178 43.3
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 9.4e-32 141.7 178 42.1
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.2e-31 141.4 179 43.0
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.1e-31 140.6 197 39.1
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.7e-31 140.2 210 40.5
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.7e-31 140.2 246 35.0
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 3.6e-31 139.8 198 41.9
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 6.1e-31 139.0 247 40.5
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 8.0e-31 138.7 250 38.8
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 2.3e-30 137.1 207 37.7
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 4.0e-30 136.3 196 42.9
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-29 134.0 226 35.8
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 3.4e-29 133.3 201 42.8
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.4e-29 132.9 265 34.0
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.7e-28 131.0 264 35.2
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.2e-28 130.6 232 38.4
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.3e-28 129.0 143 48.3
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.4e-27 127.1 153 43.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 5.4e-27 125.9 212 42.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 5.4e-27 125.9 124 52.4
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.5e-26 123.2 270 34.8
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 5.9e-26 122.5 176 42.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.0e-25 121.7 186 41.4
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.7e-25 120.9 186 40.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 2.3e-25 120.6 151 46.4
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 5.0e-25 119.4 240 34.2
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.1e-24 118.2 237 36.3
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 4.2e-24 116.3 232 34.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 8.0e-23 112.1 205 39.0
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 2.3e-22 110.5 168 40.5
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 6.8e-22 109.0 88 61.4
SEGI_28115 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 9.8e-21 105.1 79 67.1
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.7e-20 103.2 125 47.2
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 8.3e-20 102.1 177 35.0
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 3.1e-19 100.1 177 32.8
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 4.7e-15 86.3 153 37.3
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.7e-12 76.6 77 57.1
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.3e-09 68.2 117 35.9
ATR0585G124 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.7e-09 67.8 56 57.1
PRCOL_00000152 Prasinoderma coloniale HOM05D004951 ORTHO05D005840 2.3e-09 67.4 159 29.6


User provided reference genes

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