Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.3e-53 211.5 108 100.0
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.4e-22 109.8 62 79.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 5.7e-21 104.4 61 75.4
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 7.4e-21 104.0 61 75.4
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 9.7e-21 103.6 58 81.0
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 9.7e-21 103.6 61 73.8
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.7e-20 102.8 61 72.1
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.2e-20 102.4 61 72.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 3.7e-20 101.7 58 77.6
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.7e-20 101.7 58 77.6
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 4.8e-20 101.3 61 75.4
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 4.8e-20 101.3 58 77.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.3e-20 100.9 69 69.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.3e-20 100.9 69 69.6
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 6.3e-20 100.9 60 73.3
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 8.2e-20 100.5 61 73.8
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 8.2e-20 100.5 61 73.8
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 8.2e-20 100.5 58 75.9
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 8.2e-20 100.5 58 74.1
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 8.2e-20 100.5 58 75.9
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.1e-19 100.1 61 73.8
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.1e-19 100.1 61 73.8
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-19 100.1 69 71.0
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.1e-19 100.1 58 75.9
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-19 99.8 61 75.4
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-19 99.8 58 75.9
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.4e-19 99.8 61 70.5
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.4e-19 99.8 58 75.9
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.4e-19 99.8 58 75.9
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.4e-19 99.8 61 73.8
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.4e-19 99.8 58 74.1
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.8e-19 99.4 58 74.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.4e-19 99.0 58 74.1
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.4e-19 99.0 61 73.8
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 2.4e-19 99.0 58 75.9
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.1e-19 98.6 61 68.9
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.1e-19 98.6 58 74.1
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 3.1e-19 98.6 61 72.1
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.1e-19 98.2 61 72.1
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.1e-19 98.2 58 74.1
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 4.1e-19 98.2 61 70.5
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 4.1e-19 98.2 61 72.1
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 4.1e-19 98.2 58 72.4
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 4.1e-19 98.2 64 70.3
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.1e-19 98.2 58 75.9
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 5.3e-19 97.8 58 72.4
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 5.3e-19 97.8 58 72.4
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 5.3e-19 97.8 62 74.2
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.3e-19 97.8 58 75.9
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.3e-19 97.8 58 74.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 75.9
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 75.9
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 75.9
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 75.9
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 74.1
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 74.1
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 74.1
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 6.9e-19 97.4 58 74.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 9.1e-19 97.1 58 74.1
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 9.1e-19 97.1 58 74.1
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 9.1e-19 97.1 61 68.9
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 9.1e-19 97.1 58 75.9
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 9.1e-19 97.1 58 74.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 9.1e-19 97.1 58 70.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 72.4
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.2e-18 96.7 58 74.1
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.5e-18 96.3 58 72.4
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.5e-18 96.3 58 72.4
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.5e-18 96.3 58 69.0
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 2.0e-18 95.9 58 72.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.0e-18 95.9 61 72.1
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.0e-18 95.9 63 69.8
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.0e-18 95.9 63 69.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 2.0e-18 95.9 63 69.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 2.0e-18 95.9 63 69.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 2.0e-18 95.9 63 69.8
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 2.0e-18 95.9 58 72.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 2.0e-18 95.9 58 74.1
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.0e-18 95.9 63 69.8
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 2.0e-18 95.9 58 74.1
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.0e-18 95.9 58 72.4
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.6e-18 95.5 63 68.3
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.6e-18 95.5 58 72.4
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 2.6e-18 95.5 58 72.4
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.6e-18 95.5 58 67.2
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.6e-18 95.5 58 67.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 3.4e-18 95.1 62 67.7
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.4e-18 95.1 58 74.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.4e-18 95.1 58 74.1
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.5e-18 94.7 58 72.4
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.5e-18 94.7 58 72.4
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 4.5e-18 94.7 58 69.0
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.5e-18 94.7 61 72.1
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.5e-18 94.7 64 70.3
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 4.5e-18 94.7 58 72.4
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.9e-18 94.4 58 70.7
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.9e-18 94.4 58 72.4
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 7.7e-18 94.0 58 70.7
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 7.7e-18 94.0 58 69.0
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 7.7e-18 94.0 58 67.2
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 1.3e-17 93.2 61 68.9
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.7e-17 92.8 61 67.2
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.2e-17 92.4 58 70.7
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.2e-17 92.4 58 70.7
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 2.9e-17 92.0 56 73.2
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 2.9e-17 92.0 56 73.2
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 2.9e-17 92.0 56 73.2
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 2.9e-17 92.0 56 73.2
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 2.9e-17 92.0 56 73.2
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 2.9e-17 92.0 56 73.2
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.8e-17 91.7 71 63.4
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 5.0e-17 91.3 61 67.2
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 5.0e-17 91.3 62 71.0
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 5.0e-17 91.3 61 65.6
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 6.5e-17 90.9 63 66.7
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 6.5e-17 90.9 64 65.6
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 8.5e-17 90.5 58 69.0
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 8.5e-17 90.5 58 65.5
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.5e-16 89.0 66 65.2
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.2e-16 88.6 58 67.2
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.2e-16 88.6 49 85.7
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 7.2e-16 87.4 60 63.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-15 86.7 75 58.7
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.1e-15 85.9 61 63.9
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.6e-15 85.1 86 48.8
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 6.1e-15 84.3 90 48.9
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 8.0e-15 84.0 67 58.2
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 8.0e-15 84.0 61 59.0
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.0e-14 83.6 82 51.2
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.4e-14 83.2 54 72.2
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.0e-14 82.0 61 57.4
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.9e-14 81.6 49 73.5
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.9e-14 81.6 59 62.7
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 5.2e-14 81.3 86 50.0
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 6.7e-14 80.9 80 50.0
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 6.7e-14 80.9 62 61.3
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 6.7e-14 80.9 49 71.4
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.1e-13 80.1 46 76.1
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.5e-13 79.7 56 66.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 2.0e-13 79.3 46 73.9
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.6e-13 79.0 46 76.1
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 4.4e-13 78.2 54 64.8
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 7.4e-13 77.4 49 69.4
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 9.7e-13 77.0 47 70.2
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 9.7e-13 77.0 49 65.3
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 9.7e-13 77.0 46 71.7
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.3e-12 76.6 49 67.3
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.3e-12 76.6 46 69.6
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.7e-12 76.3 105 42.9
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-12 75.5 59 59.3
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.8e-12 75.5 49 67.3
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 8.2e-12 73.9 46 67.4
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.1e-11 73.6 46 69.6
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 3.1e-11 72.0 56 55.4
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.0e-10 69.3 49 61.2
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.5e-10 68.2 40 72.5
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.5e-10 68.2 46 69.6
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 5.9e-10 67.8 46 63.0
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-09 67.0 52 55.8
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 3.2e-08 62.0 38 68.4
SEGI_29736 Sequoiadendron giganteum HOM05D010422 ORTHO05D386944 3.6e-07 58.5 46 67.4
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-06 56.6 52 50.0
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-06 56.6 52 50.0
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.8e-06 56.2 49 49.0
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 3.0e-06 55.5 31 77.4
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 6.7e-06 54.3 34 67.6
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 6.7e-06 54.3 50 46.0
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 8.8e-06 53.9 29 75.9


User provided reference genes

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