Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 2.1e-175 619.0 326 100.0
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 8.9e-94 347.8 254 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 3.4e-93 345.9 249 68.3
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.7e-92 343.6 254 66.1
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 4.9e-92 342.0 247 66.4
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 8.3e-92 341.3 292 57.5
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.2e-91 339.3 254 65.7
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 4.1e-91 339.0 254 65.7
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 2.3e-89 333.2 292 56.2
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.9e-89 332.4 254 63.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 5.1e-89 332.0 255 63.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 6.6e-89 331.6 255 64.3
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 6.6e-89 331.6 255 64.3
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 6.6e-89 331.6 296 56.8
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 8.6e-89 331.3 254 63.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.5e-88 330.5 254 62.2
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.9e-88 330.1 255 62.7
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.9e-88 330.1 255 62.7
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 3.3e-88 329.3 255 63.5
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 3.3e-88 329.3 254 63.4
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.3e-88 329.3 253 62.8
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.6e-88 328.6 255 62.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 9.5e-88 327.8 255 61.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 9.5e-88 327.8 254 62.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 9.5e-88 327.8 293 57.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.2e-87 327.4 305 53.8
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.2e-87 327.4 254 61.8
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.6e-87 327.0 253 63.2
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.6e-87 327.0 255 63.5
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.6e-87 327.0 255 63.1
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.1e-87 326.6 305 55.7
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.1e-87 326.6 255 63.5
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.6e-87 325.9 293 54.6
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 3.6e-87 325.9 253 62.8
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.6e-87 325.9 253 62.8
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 3.6e-87 325.9 250 63.6
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.7e-87 325.5 253 62.5
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 6.2e-87 325.1 254 62.2
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 8.1e-87 324.7 305 53.8
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 8.1e-87 324.7 253 60.5
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 8.1e-87 324.7 256 60.2
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-86 324.3 253 62.5
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.1e-86 324.3 249 61.4
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-86 323.9 253 62.5
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.4e-86 323.9 254 62.2
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.4e-86 323.9 250 63.2
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.8e-86 323.6 253 60.5
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.8e-86 323.6 253 60.5
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.4e-86 323.2 253 60.1
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.4e-86 323.2 250 61.6
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 2.4e-86 323.2 245 63.7
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.4e-86 323.2 250 63.2
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.1e-86 322.8 254 61.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 3.1e-86 322.8 255 63.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 3.1e-86 322.8 255 62.0
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 4.0e-86 322.4 249 60.6
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-86 322.4 250 61.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-86 322.4 251 61.8
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-86 322.4 249 60.6
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 4.0e-86 322.4 251 61.8
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 4.0e-86 322.4 304 54.3
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.2e-86 322.0 240 64.2
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 5.2e-86 322.0 304 55.9
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.2e-86 322.0 256 61.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-86 321.6 253 62.1
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 6.8e-86 321.6 256 62.1
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 8.9e-86 321.2 254 61.8
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.6e-85 319.7 255 60.8
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 2.6e-85 319.7 255 61.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.4e-85 319.3 253 61.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.4e-85 318.9 254 60.6
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 7.6e-85 318.2 283 57.2
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 9.9e-85 317.8 254 62.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 9.9e-85 317.8 251 59.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 9.9e-85 317.8 242 62.4
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.3e-84 317.4 251 60.6
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.7e-84 317.0 238 62.2
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.7e-84 317.0 256 59.0
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.8e-84 315.8 257 60.3
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.9e-84 315.5 292 55.8
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.1e-83 314.3 251 58.2
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.4e-83 313.9 252 61.1
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.9e-83 313.5 253 58.9
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.4e-83 313.2 275 57.8
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 2.4e-83 313.2 253 60.9
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 5.4e-83 312.0 252 61.1
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 9.2e-83 311.2 251 61.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 9.2e-83 311.2 250 58.8
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-82 310.5 251 60.2
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 2.1e-82 310.1 285 55.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.7e-82 309.7 257 59.5
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 4.6e-82 308.9 251 61.4
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 7.8e-82 308.1 256 59.8
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.3e-81 307.4 257 58.8
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 1.7e-81 307.0 257 57.6
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.7e-81 307.0 256 58.6
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.5e-80 303.9 254 58.3
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.9e-80 303.5 256 58.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.5e-80 303.1 239 62.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 3.3e-80 302.8 259 58.3
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 4.3e-80 302.4 316 51.9
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 7.3e-80 301.6 235 63.0
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 2.8e-79 299.7 272 57.4
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 4.0e-78 295.8 267 57.7
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.9e-78 295.0 256 58.2
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 6.9e-78 295.0 269 55.4
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.2e-77 294.3 228 61.4
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.2e-77 294.3 252 57.1
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.2e-77 294.3 213 64.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.5e-77 293.9 230 62.6
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.5e-77 293.9 230 62.6
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 3.4e-77 292.7 233 60.5
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.9e-75 287.0 261 56.7
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.9e-75 287.0 262 54.2
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 5.4e-75 285.4 255 57.3
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.4e-75 285.4 230 58.3
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.6e-74 283.9 234 58.1
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.3e-73 280.0 238 59.2
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.5e-72 277.3 291 50.2
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 5.6e-72 275.4 254 56.3
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 7.3e-72 275.0 229 57.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.9e-68 263.1 230 56.5
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 5.4e-67 258.8 192 63.0
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.1e-64 251.1 250 52.4
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.4e-61 239.6 254 46.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.3e-60 237.7 213 55.4
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 7.6e-53 211.8 142 69.7
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.3e-52 211.1 142 67.6
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.2e-52 210.3 142 71.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 5.5e-51 205.7 174 58.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 9.3e-51 204.9 209 50.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.6e-50 202.6 175 57.1
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.3e-48 196.4 164 57.9
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.7e-47 193.0 251 45.8
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-45 188.0 239 41.8
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.5e-45 187.6 114 78.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.6e-45 186.8 114 76.3
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-40 171.4 182 52.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 3.4e-37 159.8 245 38.8
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-35 153.7 97 71.1
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 3.9e-33 146.4 254 37.4
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.3e-31 141.4 128 49.2
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.4e-29 133.3 84 70.2
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 2.5e-27 127.1 137 50.4
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 8.8e-25 118.6 184 40.2
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 9.1e-22 108.6 79 63.3
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.0e-20 105.1 88 54.5
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.2e-19 99.0 62 69.4
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 6.7e-17 92.4 280 26.8
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.5e-16 91.3 108 42.6
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 9.7e-16 88.6 231 26.8
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 6.3e-15 85.9 154 29.9
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 8.2e-15 85.5 168 31.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.4e-14 84.0 62 61.3
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 4.1e-14 83.2 67 56.7
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 3.5e-13 80.1 110 41.8
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.0e-12 78.6 48 77.1
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 6.5e-12 75.9 169 26.6
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 6.1e-10 69.3 142 33.1
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 3.4e-08 63.5 143 27.3
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 3.7e-07 60.1 86 39.5
Pp3c25_12270 Physcomitrium patens HOM05D004215 ORTHO05D005293 8.3e-07 58.9 50 54.0
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.4e-06 57.4 136 26.5


User provided reference genes

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