Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 7.4e-62 240.4 121 100.0
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 3.5e-19 98.6 84 59.5
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 2.3e-18 95.9 81 64.2
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 6.6e-18 94.4 81 63.0
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.5e-17 93.2 82 59.8
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.5e-17 92.4 81 61.7
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 3.3e-17 92.0 83 59.0
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 9.5e-17 90.5 78 59.0
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 9.5e-17 90.5 81 60.5
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.6e-16 89.7 81 56.8
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.1e-16 89.4 86 58.1
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.1e-15 87.0 81 56.8
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 1.4e-15 86.7 85 58.8
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 1.8e-15 86.3 81 56.8
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 2.3e-15 85.9 82 57.3
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.3e-15 85.9 83 57.8
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 5.2e-15 84.7 83 59.0
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 5.2e-15 84.7 81 58.0
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 6.8e-15 84.3 81 54.3
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 8.9e-15 84.0 82 58.5
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 8.9e-15 84.0 80 56.2
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 8.9e-15 84.0 81 55.6
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 8.9e-15 84.0 81 54.3
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 1.2e-14 83.6 90 51.1
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 1.2e-14 83.6 81 58.0
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.2e-14 83.6 83 54.2
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 1.5e-14 83.2 83 51.8
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 2.0e-14 82.8 81 54.3
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-14 82.4 81 54.3
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-14 82.4 81 54.3
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-14 82.4 81 54.3
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.6e-14 82.4 81 58.0
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 2.6e-14 82.4 80 56.2
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 3.4e-14 82.0 82 59.8
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 3.4e-14 82.0 81 59.3
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.4e-14 82.0 81 51.9
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.4e-14 82.0 81 51.9
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 3.4e-14 82.0 82 52.4
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.4e-14 81.6 81 54.3
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 4.4e-14 81.6 81 58.0
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.5e-14 80.9 81 53.1
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 7.5e-14 80.9 80 53.8
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 9.8e-14 80.5 81 54.3
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.8e-14 80.5 81 50.6
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.3e-13 80.1 80 51.2
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.3e-13 80.1 80 51.2
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.3e-13 80.1 81 53.1
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.3e-13 80.1 80 57.5
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.3e-13 80.1 80 56.2
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.7e-13 79.7 80 55.0
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 2.2e-13 79.3 80 58.8
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 2.2e-13 79.3 82 52.4
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 2.2e-13 79.3 81 54.3
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 2.9e-13 79.0 80 52.5
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.7e-13 78.6 83 54.2
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 4.9e-13 78.2 82 56.1
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 6.4e-13 77.8 83 53.0
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 6.4e-13 77.8 83 53.0
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.4e-13 77.8 80 53.8
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 6.4e-13 77.8 78 52.6
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 8.3e-13 77.4 81 54.3
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 8.3e-13 77.4 86 50.0
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.1e-12 77.0 81 54.3
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.4e-12 76.6 81 51.9
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.9e-12 76.3 81 51.9
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 3.2e-12 75.5 81 53.1
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 3.2e-12 75.5 81 53.1
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 3.2e-12 75.5 81 53.1
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.2e-12 75.5 81 53.1
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 4.1e-12 75.1 81 54.3
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 4.1e-12 75.1 79 51.9
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 4.1e-12 75.1 81 51.9
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 5.4e-12 74.7 81 50.6
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 7.1e-12 74.3 80 58.8
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 7.1e-12 74.3 78 59.0
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.2e-11 73.6 83 50.6
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.6e-11 73.2 73 54.8
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.6e-11 73.2 81 51.9
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 2.1e-11 72.8 80 52.5
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 2.1e-11 72.8 80 52.5
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 2.1e-11 72.8 80 52.5
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.1e-11 72.8 80 52.5
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.1e-11 72.8 80 52.5
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 2.1e-11 72.8 83 50.6
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.1e-11 72.8 76 50.0
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.7e-11 72.4 81 48.1
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.5e-11 72.0 80 52.5
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 3.5e-11 72.0 88 48.9
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.5e-11 72.0 81 50.6
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 4.6e-11 71.6 76 57.9
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 4.6e-11 71.6 76 57.9
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 4.6e-11 71.6 67 58.2
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.8e-11 70.9 80 56.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.3e-10 70.1 78 51.3
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.3e-10 70.1 90 46.7
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.7e-10 69.7 86 51.2
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 5.1e-10 68.2 82 50.0
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 5.1e-10 68.2 74 50.0
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 6.6e-10 67.8 77 53.2
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 4.3e-09 65.1 58 60.3
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 4.3e-09 65.1 59 59.3
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 7.3e-09 64.3 94 42.6
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.6e-08 63.2 91 44.0
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.1e-08 62.8 59 52.5
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.8e-08 62.4 43 65.1
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 4.7e-08 61.6 43 69.8
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 6.2e-08 61.2 44 65.9
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 6.2e-08 61.2 79 45.6
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.1e-07 60.5 44 65.9
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.1e-07 60.5 44 65.9
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.4e-07 60.1 79 44.3
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.4e-07 60.1 79 45.6
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.8e-07 59.7 55 50.9
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.0e-07 58.5 109 34.9
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.2e-07 58.2 52 51.9
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.2e-07 58.2 52 51.9
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 4.4e-06 55.1 52 44.2
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.9e-06 53.9 43 55.8


User provided reference genes

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