Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 3.1e-51 204.9 109 100.0
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 4.7e-15 84.7 107 50.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.9e-14 80.5 108 48.1
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.2e-13 80.1 107 47.7
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.4e-13 78.2 90 52.2
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 5.8e-13 77.8 52 73.1
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 5.8e-13 77.8 85 55.3
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 5.8e-13 77.8 89 52.8
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 5.8e-13 77.8 52 73.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 5.8e-13 77.8 89 52.8
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 5.8e-13 77.8 85 55.3
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 7.5e-13 77.4 89 52.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 9.8e-13 77.0 114 48.2
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 9.8e-13 77.0 107 46.7
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.3e-12 76.6 89 52.8
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.2e-12 75.9 109 45.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.2e-12 75.9 111 46.8
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 3.7e-12 75.1 106 47.2
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.9e-12 74.7 114 48.2
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.1e-11 73.6 106 45.3
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.4e-11 73.2 96 51.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.9e-11 72.8 112 43.8
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.9e-11 72.8 77 53.2
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 3.2e-11 72.0 113 46.9
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.2e-11 72.0 77 51.9
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 7.0e-11 70.9 106 44.3
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.0e-11 70.9 78 53.8
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 9.2e-11 70.5 106 45.3
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.2e-10 70.1 49 69.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.2e-10 70.1 73 54.8
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.6e-10 69.7 106 43.4
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 1.6e-10 69.7 106 44.3
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.0e-10 69.3 106 43.4
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.7e-10 68.9 84 57.1
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 2.7e-10 68.9 107 43.9
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 3.5e-10 68.6 110 44.5
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.5e-10 68.6 105 45.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 3.5e-10 68.6 111 45.9
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.3e-09 65.9 107 43.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.6e-09 64.3 90 45.6
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 6.6e-09 64.3 51 68.6
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.6e-09 63.9 107 43.0
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.6e-09 63.9 107 43.0
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.1e-08 63.5 86 48.8
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.1e-08 63.5 119 39.5
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.5e-08 63.2 111 41.4
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.5e-08 63.2 98 44.9
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.5e-08 63.2 108 42.6
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.9e-08 62.8 113 44.2
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 3.3e-08 62.0 98 42.9
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 3.3e-08 62.0 88 48.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.3e-08 62.0 99 46.5
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 5.6e-08 61.2 82 48.8
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.6e-08 61.2 106 45.3
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 5.6e-08 61.2 104 44.2
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 7.3e-08 60.8 42 69.0
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 9.5e-08 60.5 61 57.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.5e-08 60.5 106 45.3
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.5e-08 60.5 106 45.3
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 9.5e-08 60.5 108 41.7
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.2e-07 60.1 100 43.0
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.2e-07 60.1 82 48.8
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.6e-07 59.7 45 71.1
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.6e-07 59.7 45 71.1
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.6e-07 59.7 45 66.7
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.6e-07 59.7 71 49.3
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.6e-07 59.7 99 42.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.6e-07 59.7 106 44.3
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.6e-07 59.7 69 53.6
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.1e-07 59.3 70 52.9
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-07 59.3 109 44.0
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.1e-07 59.3 54 61.1
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.1e-07 59.3 90 47.8
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 2.1e-07 59.3 101 44.6
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 2.8e-07 58.9 61 59.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.8e-07 58.9 119 38.7
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 3.6e-07 58.5 47 63.8
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 4.7e-07 58.2 102 48.0
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 4.7e-07 58.2 97 41.2
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 8.0e-07 57.4 43 67.4
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 8.0e-07 57.4 88 47.7
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 8.0e-07 57.4 89 44.9
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.1e-06 57.0 101 44.6
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-06 57.0 97 43.3
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.1e-06 57.0 85 42.4
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.4e-06 56.6 109 38.5
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.4e-06 56.6 43 67.4
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.4e-06 56.6 106 38.7
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.4e-06 56.6 101 40.6
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.4e-06 56.6 102 45.1
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.8e-06 56.2 83 42.2
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.8e-06 56.2 100 41.0
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 2.3e-06 55.8 84 38.1
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 2.3e-06 55.8 81 46.9
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 2.3e-06 55.8 98 42.9
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 2.3e-06 55.8 99 42.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 4.0e-06 55.1 66 45.5
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 4.0e-06 55.1 94 41.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 4.0e-06 55.1 94 41.5
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 4.0e-06 55.1 96 39.6
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 4.0e-06 55.1 100 43.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 4.0e-06 55.1 98 41.8
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 4.0e-06 55.1 110 37.3
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 4.0e-06 55.1 43 65.1
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 5.2e-06 54.7 72 51.4
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 5.2e-06 54.7 98 43.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 5.2e-06 54.7 82 41.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 5.2e-06 54.7 45 62.2
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 5.2e-06 54.7 100 39.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 6.8e-06 54.3 104 40.4
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 6.8e-06 54.3 43 58.1
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 6.8e-06 54.3 53 54.7
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 6.8e-06 54.3 92 42.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 8.9e-06 53.9 68 50.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 8.9e-06 53.9 66 45.5
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 8.9e-06 53.9 69 49.3
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 8.9e-06 53.9 109 36.7


User provided reference genes

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