Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.2e-143 512.3 265 100.0
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 4.8e-53 212.2 158 66.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 4.8e-53 212.2 158 67.1
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.4e-52 210.7 158 67.1
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.4e-52 210.7 158 67.7
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-52 210.7 158 67.1
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-52 210.7 158 67.1
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.4e-52 210.7 158 67.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.4e-52 210.7 158 67.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.8e-52 210.3 158 66.5
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.1e-52 209.5 158 67.1
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.1e-52 209.5 158 65.8
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.9e-52 208.4 209 57.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 6.9e-52 208.4 204 56.4
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.2e-51 207.6 158 66.5
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.5e-51 207.2 158 66.5
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.5e-51 207.2 158 64.6
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.0e-51 206.8 158 66.5
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.0e-51 206.8 158 64.6
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.6e-51 206.5 210 58.1
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.6e-51 206.5 210 56.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.6e-51 206.5 158 64.6
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 3.4e-51 206.1 209 56.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 3.4e-51 206.1 158 66.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.4e-51 206.1 163 69.3
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.4e-51 205.7 158 65.8
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 5.8e-51 205.3 158 65.8
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 5.8e-51 205.3 218 57.8
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.6e-51 204.9 158 65.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 7.6e-51 204.9 158 65.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 7.6e-51 204.9 204 55.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.3e-50 204.1 158 65.8
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.7e-50 203.8 158 65.2
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.7e-50 203.8 164 64.6
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.7e-50 203.8 164 64.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.9e-50 203.0 204 55.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 3.8e-50 202.6 158 64.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.4e-49 200.7 158 63.9
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.4e-49 200.7 159 70.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.9e-49 200.3 158 67.7
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 5.4e-49 198.7 160 64.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.4e-49 198.7 158 62.7
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 5.4e-49 198.7 160 64.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 5.4e-49 198.7 209 53.1
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 9.3e-49 198.0 164 64.0
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.2e-48 197.6 158 64.6
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.6e-48 197.2 161 64.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.6e-48 197.2 160 65.0
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.1e-48 196.8 162 63.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.7e-48 196.4 158 63.3
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.7e-48 196.4 162 59.9
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.7e-48 196.4 162 59.9
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.5e-48 196.1 158 63.3
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.5e-48 196.1 158 62.7
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.6e-48 195.7 205 54.6
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 6.0e-48 195.3 159 63.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 6.0e-48 195.3 159 63.5
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 7.8e-48 194.9 207 52.7
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 7.8e-48 194.9 206 52.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.0e-47 194.5 158 63.3
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.7e-47 193.7 161 62.7
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.0e-47 193.0 159 62.9
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.0e-47 193.0 159 62.3
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.0e-47 193.0 159 62.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 3.9e-47 192.6 159 62.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.1e-47 192.2 159 62.3
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 6.6e-47 191.8 206 51.9
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.1e-46 191.0 158 61.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.1e-46 191.0 157 63.1
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-46 191.0 159 63.5
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.9e-46 190.3 168 63.1
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.5e-46 189.9 159 68.6
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.3e-46 189.5 159 62.3
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-45 187.2 164 61.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-45 186.4 159 61.6
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.2e-45 185.3 159 61.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.1e-45 184.9 159 61.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 5.3e-44 182.2 158 60.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 6.9e-44 181.8 158 59.5
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 9.0e-44 181.4 159 59.7
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 3.4e-43 179.5 158 58.2
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.4e-43 179.5 158 58.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 9.9e-43 177.9 205 46.8
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 9.9e-43 177.9 158 58.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.9e-41 173.7 204 57.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.1e-40 170.2 163 54.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 7.9e-40 168.3 204 47.1
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.0e-39 167.9 158 55.7
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-39 167.5 158 55.7
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.9e-39 166.0 158 55.7
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.9e-39 166.0 158 55.7
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-38 164.5 158 55.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-38 164.5 158 55.1
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.5e-38 163.3 158 55.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 7.4e-38 161.8 155 54.8
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 7.4e-38 161.8 158 53.8
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.4e-38 161.8 171 53.2
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.8e-37 159.1 158 53.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 8.1e-37 158.3 158 57.6
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 2.4e-36 156.8 187 46.5
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.1e-36 156.4 158 52.5
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 5.3e-36 155.6 206 45.1
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 5.3e-36 155.6 160 54.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 9.0e-36 154.8 158 51.9
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.7e-34 150.6 186 43.5
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.4e-33 147.5 156 53.8
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 7.1e-33 145.2 160 48.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.2e-32 144.4 164 51.2
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 2.1e-32 143.7 109 66.1
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.3e-31 141.0 205 42.0
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 6.7e-31 138.7 166 48.2
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.3e-30 136.0 205 40.0
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.3e-30 136.0 158 47.5
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 8.2e-29 131.7 158 47.5
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.4e-27 126.3 158 46.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.5e-27 125.9 163 47.2
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.4e-25 120.9 158 49.4
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 5.5e-25 119.0 158 45.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.1e-22 111.3 205 37.1
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.3e-22 109.4 163 41.1
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 4.2e-17 92.8 193 34.7
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.5e-14 84.3 97 51.5
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 1.9e-09 67.4 59 57.6
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.1e-08 63.9 52 59.6
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 6.1e-08 62.4 125 36.0
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 6.1e-08 62.4 46 63.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.0e-07 61.6 39 71.8
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.8e-07 60.8 39 66.7
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.0e-06 57.4 46 58.7


User provided reference genes

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