Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 6.8e-193 677.2 345 100.0
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 4.9e-58 229.2 183 62.3
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 9.2e-57 224.9 188 60.1
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 9.2e-57 224.9 169 65.1
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.2e-56 224.6 169 62.7
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 1.6e-56 224.2 169 62.7
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 2.7e-56 223.4 169 62.1
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.7e-56 223.4 187 58.8
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.0e-55 221.5 187 58.3
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.7e-55 220.7 169 62.1
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.3e-55 220.3 169 61.5
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.3e-55 220.3 166 63.3
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.9e-55 219.5 169 62.1
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 5.1e-55 219.2 169 61.5
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 5.1e-55 219.2 169 61.5
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 8.6e-55 218.4 169 59.8
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 8.6e-55 218.4 169 62.7
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 8.6e-55 218.4 169 60.9
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.1e-54 218.0 169 60.9
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.1e-54 218.0 169 61.5
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.5e-54 217.6 175 59.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 1.5e-54 217.6 190 57.4
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.5e-54 217.6 190 57.4
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 4.3e-54 216.1 169 59.8
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 4.3e-54 216.1 167 60.5
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 4.3e-54 216.1 169 60.4
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 4.3e-54 216.1 169 60.4
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.3e-54 216.1 174 60.3
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 5.6e-54 215.7 169 60.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 5.6e-54 215.7 167 61.7
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 7.3e-54 215.3 167 60.5
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 9.5e-54 214.9 167 59.9
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 9.5e-54 214.9 169 59.8
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 9.5e-54 214.9 169 59.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 9.5e-54 214.9 169 59.8
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 9.5e-54 214.9 169 59.8
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 9.5e-54 214.9 167 62.9
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 9.5e-54 214.9 169 59.8
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 1.6e-53 214.2 169 60.4
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.6e-53 214.2 170 61.2
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 2.1e-53 213.8 169 59.2
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.1e-53 213.8 170 60.6
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 2.8e-53 213.4 169 59.2
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 2.8e-53 213.4 173 59.5
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.8e-53 213.4 169 59.2
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 3.6e-53 213.0 169 59.2
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.6e-53 213.0 169 60.4
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 4.7e-53 212.6 169 59.8
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.7e-53 212.6 166 60.2
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 4.7e-53 212.6 169 60.4
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 4.7e-53 212.6 169 60.4
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 6.2e-53 212.2 169 58.6
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.2e-53 212.2 170 60.0
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 6.2e-53 212.2 170 59.4
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 6.2e-53 212.2 169 59.8
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.1e-52 211.5 169 59.2
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.1e-52 211.5 170 60.0
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 1.1e-52 211.5 169 58.0
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.1e-52 211.5 170 59.4
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.4e-52 211.1 170 58.8
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.4e-52 211.1 170 59.4
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.4e-52 211.1 167 61.7
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.8e-52 210.7 169 58.6
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 1.8e-52 210.7 173 60.1
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.8e-52 210.7 170 58.8
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.4e-52 210.3 161 60.9
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 2.4e-52 210.3 167 61.7
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 3.1e-52 209.9 170 60.0
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 3.1e-52 209.9 169 60.4
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 3.1e-52 209.9 174 58.6
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 3.1e-52 209.9 181 57.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.0e-52 209.5 170 60.0
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 4.0e-52 209.5 174 59.2
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 5.2e-52 209.1 170 60.0
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 5.2e-52 209.1 179 58.7
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 5.2e-52 209.1 169 58.0
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 5.2e-52 209.1 170 60.6
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 8.9e-52 208.4 169 58.6
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 8.9e-52 208.4 169 58.6
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 8.9e-52 208.4 169 58.6
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.2e-51 208.0 169 58.0
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-51 208.0 169 58.0
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.2e-51 208.0 169 58.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 1.2e-51 208.0 170 60.0
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.2e-51 208.0 182 57.1
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.0e-51 207.2 177 59.9
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.0e-51 207.2 169 59.8
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 2.0e-51 207.2 174 60.9
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 2.6e-51 206.8 173 59.0
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 2.6e-51 206.8 167 61.7
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 4.4e-51 206.1 174 60.3
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 4.4e-51 206.1 174 60.3
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 5.8e-51 205.7 170 57.6
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 5.8e-51 205.7 170 57.6
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.7e-50 204.1 173 57.8
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 2.2e-50 203.8 174 59.2
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 2.9e-50 203.4 174 59.8
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 4.9e-50 202.6 170 57.1
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.4e-50 202.2 170 57.6
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.4e-50 201.8 174 59.2
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.4e-50 201.8 174 59.2
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.4e-49 201.1 183 53.6
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 7.1e-49 198.7 200 53.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 4.6e-48 196.1 148 64.2
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.3e-47 194.5 169 56.2
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 2.3e-47 193.7 169 56.2
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 3.9e-47 193.0 170 54.1
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 5.1e-47 192.6 176 53.4
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 8.6e-47 191.8 169 56.2
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 7.3e-46 188.7 133 67.7
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 2.8e-45 186.8 137 65.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.8e-45 186.8 136 65.4
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 9.9e-43 178.3 158 53.8
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 9.9e-43 178.3 158 53.8
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.3e-42 177.9 132 64.4
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 3.8e-42 176.4 158 53.8
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 4.9e-42 176.0 132 63.6
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 1.9e-41 174.1 256 39.8
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 3.0e-39 166.8 140 56.4
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 1.3e-37 161.4 113 64.6
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 3.6e-37 159.8 120 63.3
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 6.2e-37 159.1 150 56.7
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.1e-36 158.3 96 74.0
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.6e-35 153.7 107 64.5
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 3.4e-35 153.3 286 33.9
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 7.1e-33 145.6 169 43.8
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.6e-32 144.4 104 65.4
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.6e-32 144.4 112 60.7
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 5.1e-31 139.4 104 63.5
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 8.7e-31 138.7 101 64.4
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 9.6e-30 135.2 109 62.4
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 3.7e-29 133.3 92 68.5
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 6.2e-29 132.5 103 60.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 8.1e-29 132.1 124 54.8
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.2e-26 124.0 105 55.2
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 7.1e-25 119.0 92 58.7
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 9.3e-25 118.6 90 58.9
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 9.6e-22 108.6 90 57.8
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 9.6e-22 108.6 90 57.8
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 1.6e-16 91.3 107 42.1
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 6.7e-15 85.9 66 57.6
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 4.3e-14 83.2 62 59.7
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 2.2e-13 80.9 95 43.2
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.8e-13 80.5 78 46.2
SEGI_06409 Sequoiadendron giganteum HOM05D000929 ORTHO05D384726 6.3e-13 79.3 69 59.4
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 1.8e-12 77.8 54 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 1.3e-10 71.6 46 63.0
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 4.2e-09 66.6 48 64.6
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 7.9e-08 62.4 59 50.8
SEGI_25759 Sequoiadendron giganteum HOM05D001978 ORTHO05D010457 1.5e-06 58.2 31 87.1


User provided reference genes

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