Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.6e-186 655.2 328 100.0
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 7.5e-141 504.2 308 80.5
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.1e-139 500.4 288 83.3
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.8e-139 499.6 312 77.9
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.1e-139 498.4 311 78.5
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 7.0e-139 497.7 329 76.3
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.6e-138 496.5 288 82.3
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.9e-137 492.3 288 80.9
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 5.0e-137 491.5 286 81.5
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.1e-136 490.3 325 75.1
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.9e-136 489.6 310 76.8
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.5e-136 489.2 286 80.8
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.5e-136 489.2 322 75.2
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 4.3e-136 488.4 310 78.7
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 4.3e-136 488.4 290 80.7
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 5.6e-136 488.0 284 81.3
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 7.3e-136 487.6 322 74.8
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 7.3e-136 487.6 306 77.1
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 9.5e-136 487.3 284 81.3
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 9.5e-136 487.3 280 83.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.6e-135 486.5 284 81.3
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.6e-135 486.5 311 76.5
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.1e-135 486.1 321 75.4
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.1e-135 486.1 286 81.5
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 3.6e-135 485.3 283 81.6
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 4.7e-135 485.0 306 76.5
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 6.1e-135 484.6 287 80.5
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 8.0e-135 484.2 306 75.8
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 8.0e-135 484.2 284 81.0
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 8.0e-135 484.2 306 76.1
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 8.0e-135 484.2 284 81.0
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.0e-134 483.8 322 74.2
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.0e-134 483.8 312 75.3
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.4e-134 483.4 286 80.4
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.3e-134 482.6 284 80.6
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 3.0e-134 482.3 286 79.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 3.0e-134 482.3 288 79.9
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 4.0e-134 481.9 306 75.8
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.0e-134 481.9 288 79.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 4.0e-134 481.9 303 77.9
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 5.2e-134 481.5 312 74.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.2e-134 481.5 312 74.7
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.8e-134 481.1 286 78.0
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 6.8e-134 481.1 284 80.6
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 6.8e-134 481.1 284 81.0
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 6.8e-134 481.1 306 75.8
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 8.9e-134 480.7 286 79.0
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 8.9e-134 480.7 310 76.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.2e-133 480.3 310 75.5
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.5e-133 479.9 295 79.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.5e-133 479.9 285 78.6
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.0e-133 479.6 306 75.8
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.0e-133 479.6 310 75.5
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.6e-133 479.2 288 78.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.4e-133 478.8 312 75.0
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 3.4e-133 478.8 301 76.4
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.4e-133 478.8 285 78.6
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 7.5e-133 477.6 326 72.7
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.7e-132 476.5 284 78.5
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 1.7e-132 476.5 332 71.1
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 2.9e-132 475.7 286 78.7
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.7e-132 475.3 322 73.0
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 4.9e-132 474.9 286 78.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 6.4e-132 474.6 325 73.5
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.4e-131 473.4 288 78.1
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 3.2e-131 472.2 315 72.7
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 5.4e-131 471.5 284 77.1
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.0e-131 471.1 286 78.7
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 7.0e-131 471.1 285 78.6
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.0e-131 471.1 330 72.1
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 9.2e-131 470.7 325 71.7
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 9.2e-131 470.7 288 77.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.2e-130 470.3 347 68.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.6e-130 469.9 325 71.7
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.0e-130 469.5 288 77.8
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.7e-130 469.2 286 77.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.3e-129 466.8 307 73.9
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.0e-129 465.7 299 75.9
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.9e-129 465.3 286 76.6
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.5e-128 463.4 295 76.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.5e-128 463.4 329 69.6
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.5e-128 463.4 286 76.9
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.5e-128 463.4 320 70.9
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 3.3e-128 462.2 270 80.4
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.2e-127 460.3 345 66.4
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.8e-127 459.1 286 76.2
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 3.6e-127 458.8 307 73.3
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 4.7e-127 458.4 307 73.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 8.0e-127 457.6 294 74.5
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 8.0e-127 457.6 294 74.5
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 2.3e-126 456.1 286 74.5
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.5e-125 453.4 365 63.3
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.3e-124 450.3 286 75.5
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.2e-124 449.5 285 76.1
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 3.7e-124 448.7 270 79.3
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.4e-123 446.8 312 71.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 4.1e-123 445.3 291 75.3
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 4.1e-123 445.3 285 76.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 7.0e-123 444.5 270 78.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 5.0e-121 438.3 286 74.1
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 6.6e-121 438.0 325 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.5e-120 436.8 289 72.0
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.6e-120 434.9 311 71.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.7e-116 423.3 290 72.4
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.1e-115 420.6 270 73.7
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.1e-115 418.7 245 81.2
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.7e-114 416.0 280 67.5
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.0e-113 414.1 272 71.7
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.9e-112 409.8 304 68.4
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 5.2e-110 401.7 302 68.2
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 9.9e-109 397.5 238 79.0
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 7.8e-106 387.9 284 71.5
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 4.7e-103 378.6 245 77.6
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.1e-102 377.5 300 64.7
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 6.8e-102 374.8 263 70.3
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.8e-98 361.3 245 73.1
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.3e-96 355.5 264 68.2
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.9e-91 340.1 287 62.0
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.5e-88 330.5 259 65.6
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 7.4e-88 328.2 226 70.8
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 5.8e-77 292.0 210 71.0
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.9e-75 287.0 216 68.5
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.7e-61 238.4 153 72.5
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 5.5e-59 232.3 139 80.6
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.1e-58 230.3 139 76.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.4e-57 227.6 265 48.7
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 8.8e-57 224.9 132 83.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 8.5e-52 208.4 132 72.7
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-47 194.5 106 80.2
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.2e-47 193.7 128 74.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.4e-46 190.3 106 78.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.5e-40 171.0 276 41.3
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 7.7e-37 158.7 129 58.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.6e-34 151.0 110 65.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 2.1e-34 150.6 307 31.6
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 9.1e-30 135.2 115 58.3
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 8.8e-25 118.6 108 57.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 5.7e-24 115.9 285 32.3
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.4e-22 111.3 71 71.8
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.1e-22 110.2 84 63.1
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 3.1e-22 110.2 123 52.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-19 101.3 92 62.0
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-19 100.9 93 62.4
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 2.1e-18 97.4 81 55.6
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 5.2e-17 92.8 51 78.4
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 3.4e-16 90.1 53 83.0
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 7.5e-16 89.0 51 80.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.1e-14 85.1 50 80.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 7.8e-13 79.0 37 89.2
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 1.4e-06 58.2 72 48.6
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-06 58.2 27 85.2
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.1e-06 56.6 31 83.9


User provided reference genes

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