Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.0e-161 572.4 293 100.0
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 5.4e-50 202.2 144 77.8
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 1.1e-26 124.8 211 40.8
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 3.5e-25 119.8 206 36.4
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 6.1e-25 119.0 156 45.5
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 5.1e-24 115.9 205 39.0
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 8.7e-24 115.2 157 44.6
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 4.3e-23 112.8 161 39.8
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 7.4e-23 112.1 155 41.3
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 7.4e-23 112.1 172 40.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 2.2e-22 110.5 157 43.9
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 2.2e-22 110.5 157 43.9
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 3.7e-22 109.8 171 40.9
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 3.7e-22 109.8 190 36.8
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 4.8e-22 109.4 180 38.3
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 8.2e-22 108.6 211 35.5
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 1.1e-21 108.2 157 42.0
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-21 107.5 154 40.3
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 5.3e-21 105.9 157 40.1
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 5.3e-21 105.9 171 39.2
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.2e-20 104.8 190 35.8
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 1.2e-20 104.8 155 38.7
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 2.0e-20 104.0 158 40.5
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 2.6e-20 103.6 154 37.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.4e-20 103.2 203 34.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 5.9e-20 102.4 154 39.6
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 7.7e-20 102.1 157 40.1
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 1.0e-19 101.7 157 38.9
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 1.0e-19 101.7 156 39.1
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 1.3e-19 101.3 186 36.0
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 1.7e-19 100.9 154 37.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 1.7e-19 100.9 200 35.0
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 2.2e-19 100.5 199 32.2
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 2.9e-19 100.1 172 36.0
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 2.9e-19 100.1 200 34.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 6.5e-19 99.0 178 36.5
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 8.5e-19 98.6 202 33.7
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 8.5e-19 98.6 202 33.7
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 8.5e-19 98.6 157 36.9
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 8.5e-19 98.6 156 39.1
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 8.5e-19 98.6 155 36.1
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 1.4e-18 97.8 158 34.8
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 1.4e-18 97.8 172 35.5
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.9e-18 97.4 155 38.1
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 1.9e-18 97.4 158 39.2
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 2.5e-18 97.1 155 37.4
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 4.2e-18 96.3 200 34.5
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 4.2e-18 96.3 157 36.3
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 7.2e-18 95.5 157 36.3
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 7.2e-18 95.5 204 34.3
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 7.2e-18 95.5 210 33.8
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 7.2e-18 95.5 212 31.6
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 9.4e-18 95.1 156 37.2
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 9.4e-18 95.1 156 37.2
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 9.4e-18 95.1 212 31.6
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.2e-17 94.7 170 35.3
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.7e-17 93.6 170 35.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 3.6e-17 93.2 159 38.4
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 3.6e-17 93.2 231 32.9
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 3.6e-17 93.2 156 37.2
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 7.9e-17 92.0 156 36.5
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 7.9e-17 92.0 159 39.0
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 1.4e-16 91.3 169 35.5
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 1.8e-16 90.9 163 39.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 2.3e-16 90.5 157 36.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 2.3e-16 90.5 156 37.8
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 2.3e-16 90.5 162 39.5
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 3.9e-16 89.7 158 35.4
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 1.5e-15 87.8 154 33.8
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 1.5e-15 87.8 202 34.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 1.5e-15 87.8 157 38.2
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 2.0e-15 87.4 154 37.7
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 3.3e-15 86.7 157 37.6
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 3.3e-15 86.7 175 36.0
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 3.3e-15 86.7 171 35.1
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 4.3e-15 86.3 176 34.1
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 4.3e-15 86.3 177 33.9
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 7.4e-15 85.5 174 32.2
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 1.7e-14 84.3 177 33.3
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 1.7e-14 84.3 172 33.7
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 2.2e-14 84.0 176 35.2
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 4.8e-14 82.8 157 35.0
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 6.3e-14 82.4 158 33.5
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 6.3e-14 82.4 156 36.5
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 8.2e-14 82.0 177 32.8
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 8.2e-14 82.0 174 32.8
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 2.4e-13 80.5 177 32.2
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 4.1e-13 79.7 170 37.1
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.5e-12 77.8 154 31.8
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 3.4e-12 76.6 154 31.8
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 3.8e-11 73.2 156 32.1
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 1.3e-06 58.2 111 34.2
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 2.8e-06 57.0 145 31.0
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 8.2e-06 55.5 77 36.4


User provided reference genes

Program Settings