Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28869 Sequoiadendron giganteum HOM05D000372 ORTHO05D004502 0.0e+00 1281.5 640 100.0
ATR0712G052 Amborella trichopoda HOM05D000372 ORTHO05D004502 6.1e-70 269.6 637 33.3
MD15G1243500 Malus domestica HOM05D000372 ORTHO05D004502 3.0e-61 240.7 601 32.3
TAR110G0002 Trochodendron aralioides HOM05D000372 ORTHO05D004502 6.7e-61 239.6 603 32.0
TAR628G1126 Trochodendron aralioides HOM05D000372 ORTHO05D004502 4.3e-60 236.9 599 32.2
Prupe.7G170700 Prunus persica HOM05D000372 ORTHO05D004502 5.7e-60 236.5 601 32.4
CSS0039853 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 8.2e-59 232.6 600 30.2
Glyma.01G164800 Glycine max HOM05D000372 ORTHO05D004502 8.2e-59 232.6 601 32.9
Duzib187G1535 Durio zibethinus HOM05D000372 ORTHO05D004502 1.1e-58 232.3 601 31.1
Gohir.D11G045900 Gossypium hirsutum HOM05D000372 ORTHO05D004502 1.4e-58 231.9 603 31.2
Gohir.A11G042400 Gossypium hirsutum HOM05D000372 ORTHO05D004502 2.4e-58 231.1 603 30.8
Gorai.007G049200 Gossypium raimondii HOM05D000372 ORTHO05D004502 2.4e-58 231.1 603 30.7
MD02G1128300 Malus domestica HOM05D000372 ORTHO05D004502 2.4e-58 231.1 604 32.1
CiPaw.07G060500 Carya illinoinensis HOM05D000372 ORTHO05D004502 3.1e-58 230.7 599 30.4
EL10Ac6g15493 Beta vulgaris HOM05D000372 ORTHO05D004502 5.3e-58 229.9 601 30.9
Cpa.g.sc6.277 Carica papaya HOM05D000372 ORTHO05D004502 2.0e-57 228.0 600 30.2
Thecc.01G015600 Theobroma cacao HOM05D000372 ORTHO05D004502 5.9e-57 226.5 599 30.2
VMungo1215G2296 Vigna mungo HOM05D000372 ORTHO05D004502 1.3e-56 225.3 606 31.5
Glyma.11G078300 Glycine max HOM05D000372 ORTHO05D004502 3.8e-56 223.8 599 31.6
Aqoxy6G02190 Aquilegia oxysepala HOM05D000372 ORTHO05D004502 6.5e-56 223.0 600 31.2
Dinv40109 Davidia involucrata HOM05D000372 ORTHO05D004502 8.5e-56 222.6 602 29.9
Phvul.002G107100 Phaseolus vulgaris HOM05D000372 ORTHO05D004502 8.5e-56 222.6 606 31.2
Cfa006992 Carpinus fangiana HOM05D000372 ORTHO05D004502 1.1e-55 222.2 604 29.1
QL06p050985 Quercus lobata HOM05D000372 ORTHO05D004502 1.9e-55 221.5 600 29.3
Nn6g32011 Nelumbo nucifera HOM05D000372 ORTHO05D004502 3.2e-55 220.7 606 31.7
arahy.Tifrunner.gnm1.ann1.5M4X83 Arachis hypogaea HOM05D000372 ORTHO05D004502 5.5e-55 219.9 602 30.6
arahy.Tifrunner.gnm1.ann1.ZZ0D7Q Arachis hypogaea HOM05D000372 ORTHO05D004502 5.5e-55 219.9 602 30.6
Peaxi162Scf00328g00717 Petunia axillaris HOM05D000372 ORTHO05D004502 5.5e-55 219.9 600 31.3
COL.COLO4_22452 Corchorus olitorius HOM05D000372 ORTHO05D004502 7.2e-55 219.5 603 31.0
Lj2g0023961 Lotus japonicus HOM05D000372 ORTHO05D004502 9.4e-55 219.2 599 30.7
Lj4g0025702 Lotus japonicus HOM05D000372 ORTHO05D004502 1.6e-54 218.4 602 29.4
Solyc02g083670.4 Solanum lycopersicum HOM05D000372 ORTHO05D004502 1.6e-54 218.4 599 30.2
FvH4_1g11530 Fragaria vesca HOM05D000372 ORTHO05D004502 2.1e-54 218.0 603 30.8
CAN.G1274.23 Capsicum annuum HOM05D000372 ORTHO05D004502 2.7e-54 217.6 599 30.1
PSO675G5056 Papaver somniferum HOM05D000372 ORTHO05D004502 3.6e-54 217.2 601 32.3
Rhsim10G0210600 Rhododendron simsii HOM05D000372 ORTHO05D004502 4.7e-54 216.9 599 30.1
CiPaw.08G129700 Carya illinoinensis HOM05D000372 ORTHO05D004502 6.1e-54 216.5 604 30.1
Sopen02g028450 Solanum pennellii HOM05D000372 ORTHO05D004502 6.1e-54 216.5 599 30.2
RcHm_v2.0_Chr2g0099171 Rosa chinensis HOM05D000372 ORTHO05D004502 7.9e-54 216.1 601 32.1
AUR62003350 Chenopodium quinoa HOM05D000372 ORTHO05D004502 1.8e-53 214.9 603 31.3
AUR62029486 Chenopodium quinoa HOM05D000372 ORTHO05D004502 1.8e-53 214.9 602 31.2
FAN23G0866 Fragaria x ananassa HOM05D000372 ORTHO05D004502 1.8e-53 214.9 600 30.5
Glyma.16G125100 Glycine max HOM05D000372 ORTHO05D004502 2.3e-53 214.5 603 30.3
Nn5g30757 Nelumbo nucifera HOM05D000372 ORTHO05D004502 2.3e-53 214.5 607 30.8
PGSC0003DMG400003578 Solanum tuberosum HOM05D000372 ORTHO05D004502 2.3e-53 214.5 599 30.4
TWI53G0045 Tripterygium wilfordii HOM05D000372 ORTHO05D004502 2.3e-53 214.5 604 30.8
Duzib147G1045 Durio zibethinus HOM05D000372 ORTHO05D004502 3.0e-53 214.2 605 30.6
FAN19G2794 Fragaria x ananassa HOM05D000372 ORTHO05D004502 3.0e-53 214.2 610 30.0
PSO541G0188 Papaver somniferum HOM05D000372 ORTHO05D004502 3.0e-53 214.2 601 30.0
FAN28G0543 Fragaria x ananassa HOM05D000372 ORTHO05D004502 5.1e-53 213.4 607 30.5
GSVIVG01018749001 Vitis vinifera HOM05D000372 ORTHO05D004502 5.1e-53 213.4 600 29.5
Ca_24916_v3 Cicer arietinum L. HOM05D000372 ORTHO05D004502 6.7e-53 213.0 601 29.3
FAN26G1228 Fragaria x ananassa HOM05D000372 ORTHO05D004502 1.1e-52 212.2 611 31.3
Potri.007G056400 Populus trichocarpa HOM05D000372 ORTHO05D004502 2.0e-52 211.5 606 29.7
CSS0007471 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 2.6e-52 211.1 599 29.7
CANSAT25G3275 Cannabis sativa HOM05D000372 ORTHO05D004502 3.3e-52 210.7 601 29.1
Eucgr.I02335 Eucalyptus grandis HOM05D000372 ORTHO05D004502 3.3e-52 210.7 610 30.2
Glyma.02G046600 Glycine max HOM05D000372 ORTHO05D004502 3.3e-52 210.7 606 30.5
Lj4A222T49 Lonicera japonica HOM05D000372 ORTHO05D004502 3.3e-52 210.7 604 30.8
Oeu014561.2 Olea europaea HOM05D000372 ORTHO05D004502 5.7e-52 209.9 599 28.4
vmacro22145 Vaccinium macrocarpon HOM05D000372 ORTHO05D004502 7.4e-52 209.5 599 30.9
Gorai.003G008400 Gossypium raimondii HOM05D000372 ORTHO05D004502 9.7e-52 209.1 600 29.5
TWI73G1271 Tripterygium wilfordii HOM05D000372 ORTHO05D004502 9.7e-52 209.1 603 29.7
Hma1.2p1_0869F.1_g230760 Hydrangea macrophylla HOM05D000372 ORTHO05D004502 1.7e-51 208.4 599 29.5
Potri.005G111700 Populus trichocarpa HOM05D000372 ORTHO05D004502 2.2e-51 208.0 605 28.9
Gohir.D03G008200 Gossypium hirsutum HOM05D000372 ORTHO05D004502 2.8e-51 207.6 600 29.5
PGR119G2511 Punica granatum HOM05D000372 ORTHO05D004502 2.8e-51 207.6 609 29.7
Ah.03g149030 Amaranthus hybridus HOM05D000372 ORTHO05D004502 6.3e-51 206.5 600 29.2
Actinidia22958 Actinidia chinensis HOM05D000372 ORTHO05D004502 1.1e-50 205.7 603 30.3
Manes.02G106100 Manihot esculenta HOM05D000372 ORTHO05D004502 1.1e-50 205.7 604 29.3
VMungo0251G1705 Vigna mungo HOM05D000372 ORTHO05D004502 1.1e-50 205.7 602 30.2
arahy.Tifrunner.gnm1.ann1.15FVU2 Arachis hypogaea HOM05D000372 ORTHO05D004502 1.4e-50 205.3 614 28.5
Phvul.003G264600 Phaseolus vulgaris HOM05D000372 ORTHO05D004502 1.4e-50 205.3 604 30.6
Sabra05G0091400 Salix brachista HOM05D000372 ORTHO05D004502 1.4e-50 205.3 605 30.7
CSS0008893 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 1.8e-50 204.9 599 28.4
Duzib264G1133 Durio zibethinus HOM05D000372 ORTHO05D004502 1.8e-50 204.9 600 29.3
THA.LOC104819744 Tarenaya hassleriana HOM05D000372 ORTHO05D004502 1.8e-50 204.9 604 30.5
Gohir.A02G171900 Gossypium hirsutum HOM05D000372 ORTHO05D004502 2.4e-50 204.5 599 29.4
MSTRG.3608 Avicennia marina HOM05D000372 ORTHO05D004502 4.1e-50 203.8 603 29.7
Lalb_Chr05g0212311 Lupinus albus HOM05D000372 ORTHO05D004502 4.1e-50 203.8 601 29.8
Cc07_g10990 Coffea canephora HOM05D000372 ORTHO05D004502 7.0e-50 203.0 607 29.7
Sc07g0001070 Simmondsia chinensis HOM05D000372 ORTHO05D004502 2.6e-49 201.1 602 27.6
Manes.01G147600 Manihot esculenta HOM05D000372 ORTHO05D004502 3.5e-49 200.7 600 28.3
Pp3c5_3880 Physcomitrium patens HOM05D000372 ORTHO05D004502 3.5e-49 200.7 673 28.4
ClCG10G000620 Citrullus lanatus HOM05D000372 ORTHO05D004502 1.7e-48 198.4 602 29.4
Psat2g153400 Pisum sativum HOM05D000372 ORTHO05D004502 2.2e-48 198.0 600 29.0
Sabra07G0048400 Salix brachista HOM05D000372 ORTHO05D004502 2.2e-48 198.0 607 28.8
Medtr5g022470 Medicago truncatula HOM05D000372 ORTHO05D004502 2.9e-48 197.6 600 28.8
Psat4g101400 Pisum sativum HOM05D000372 ORTHO05D004502 2.9e-48 197.6 599 29.0
Lalb_Chr05g0229781 Lupinus albus HOM05D000372 ORTHO05D004502 3.8e-48 197.2 603 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2594 Anthoceros agrestis HOM05D000372 ORTHO05D004502 6.5e-48 196.4 642 31.5
Haze_03739 Corylus avellana HOM05D000372 ORTHO05D004502 1.1e-47 195.7 604 28.6
MELO3C013758.2 Cucumis melo HOM05D000372 ORTHO05D004502 1.1e-47 195.7 608 28.3
Pp3c6_20120 Physcomitrium patens HOM05D000372 ORTHO05D004502 1.1e-47 195.7 665 29.5
ECA238G2015 Erigeron canadensis HOM05D000372 ORTHO05D004502 7.2e-47 193.0 600 29.7
SalBow5G2527 Salvia bowleyana HOM05D000372 ORTHO05D004502 7.2e-47 193.0 601 28.8
CsaV3_3G000700 Cucumis sativus L. HOM05D000372 ORTHO05D004502 2.7e-46 191.0 599 28.2
DCAR_010144 Daucus carota HOM05D000372 ORTHO05D004502 6.1e-46 189.9 603 28.7
Nitab4.5_0001658g0020 Nicotiana tabacum HOM05D000372 ORTHO05D004502 6.1e-46 189.9 558 30.3
Medtr8g075340 Medicago truncatula HOM05D000372 ORTHO05D004502 1.4e-45 188.7 603 27.7
Sed0009374 Sechium edule HOM05D000372 ORTHO05D004502 1.8e-45 188.3 606 29.4
BcaC06g36332 Brassica carinata HOM05D000372 ORTHO05D004502 2.3e-45 188.0 600 30.0
C07p05260 Brassica napus HOM05D000372 ORTHO05D004502 2.3e-45 188.0 599 30.1
CARHR108230 Cardamine hirsuta HOM05D000372 ORTHO05D004502 2.3e-45 188.0 603 29.7
TPR.G19487 Trifolium pratense HOM05D000372 ORTHO05D004502 2.3e-45 188.0 601 28.6
BolC7t40925H Brassica oleracea HOM05D000372 ORTHO05D004502 5.2e-45 186.8 599 30.1
HanXRQChr14g0441821 Helianthus annuus HOM05D000372 ORTHO05D004502 5.2e-45 186.8 600 29.3
Mapoly0001s0444 Marchantia polymorpha HOM05D000372 ORTHO05D004502 5.2e-45 186.8 645 28.1
AT2G17820 Arabidopsis thaliana HOM05D000372 ORTHO05D004502 1.1e-44 185.7 609 29.2
Actinidia26542 Actinidia chinensis HOM05D000372 ORTHO05D004502 1.5e-44 185.3 251 41.8
Ca_22392_v3 Cicer arietinum L. HOM05D000372 ORTHO05D004502 2.0e-44 184.9 600 28.7
Aa31LG6G12940 Aethionema arabicum HOM05D000372 ORTHO05D004502 2.6e-44 184.5 624 27.7
Thhalv10022521m.g Eutrema salsugineum HOM05D000372 ORTHO05D004502 2.6e-44 184.5 606 28.4
Sp3g31280 Schrenkiella parvula HOM05D000372 ORTHO05D004502 2.6e-44 184.5 612 29.2
SpUn0082_0010 Schrenkiella parvula HOM05D000372 ORTHO05D004502 2.6e-44 184.5 612 29.2
Carub.0003s3196 Capsella rubella HOM05D000372 ORTHO05D004502 3.3e-44 184.1 611 29.0
TPR.G10518 Trifolium pratense HOM05D000372 ORTHO05D004502 4.4e-44 183.7 631 27.9
HanXRQChr16g0531551 Helianthus annuus HOM05D000372 ORTHO05D004502 7.5e-44 183.0 600 28.7
A07p03130 Brassica napus HOM05D000372 ORTHO05D004502 1.7e-43 181.8 599 28.9
BraA07t28109Z Brassica rapa HOM05D000372 ORTHO05D004502 3.7e-43 180.6 599 28.9
AL3G50850 Arabidopsis lyrata HOM05D000372 ORTHO05D004502 1.8e-42 178.3 604 28.5
BcaB03g16556 Brassica carinata HOM05D000372 ORTHO05D004502 3.1e-42 177.6 605 29.3
Lsat_1_v5_gn_3_72520 Lactuca sativa HOM05D000372 ORTHO05D004502 2.7e-41 174.5 243 40.3
Atru.chr3.840 Acer truncatum HOM05D000372 ORTHO05D004502 2.9e-40 171.0 607 26.0
Migut.L00691 Erythranthe guttata HOM05D000372 ORTHO05D004502 3.2e-39 167.5 244 38.5
Lsat_1_v5_gn_2_75821 Lactuca sativa HOM05D000372 ORTHO05D004502 1.8e-37 161.8 600 27.0
Aa31LG8G15050 Aethionema arabicum HOM05D000372 ORTHO05D004502 4.8e-35 153.7 365 30.7
Oeu048483.2 Olea europaea HOM05D000372 ORTHO05D004502 9.1e-34 149.4 530 26.4
Ciclev10024739m.g Citrus clementina HOM05D000372 ORTHO05D004502 2.7e-30 137.9 241 34.0
Ciclev10025113m.g Citrus clementina HOM05D000372 ORTHO05D004502 4.1e-26 124.0 241 34.4
SMO139G0100 Selaginella moellendorffii HOM05D000372 ORTHO05D004502 5.9e-25 120.2 250 33.2
Nitab4.5_0001892g0050 Nicotiana tabacum HOM05D000372 ORTHO05D004502 1.1e-23 115.9 259 31.7
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 7.3e-23 113.2 185 36.2
ECA246G2604 Erigeron canadensis HOM05D000372 ORTHO05D004502 2.1e-22 111.7 529 24.0
AUR62043835 Chenopodium quinoa HOM05D000372 ORTHO05D004502 2.7e-17 94.7 128 44.5
CBR_g31144 Chara braunii HOM05D000372 ORTHO05D001702 7.8e-17 93.2 695 22.0
SMO201G0156 Selaginella moellendorffii HOM05D000372 ORTHO05D002769 8.0e-14 83.2 101 43.6
Hma1.2p1_1306F.1_g274630 Hydrangea macrophylla HOM05D000372 ORTHO05D004502 2.9e-11 74.7 52 75.0
Actinidia17428 Actinidia chinensis HOM05D000372 ORTHO05D004502 8.3e-11 73.2 166 33.1
Mapoly0027s0156 Marchantia polymorpha HOM05D000372 ORTHO05D004502 1.9e-10 72.0 89 46.1
MBI09_g13309_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D004502 9.2e-10 69.7 49 65.3
Mapoly0046s0066 Marchantia polymorpha HOM05D000372 ORTHO05D004502 3.5e-09 67.8 99 36.4
Pp3c2_16310 Physcomitrium patens HOM05D000372 ORTHO05D004502 3.5e-09 67.8 133 29.3
Pp3c21_21550 Physcomitrium patens HOM05D000372 ORTHO05D004502 6.6e-08 63.5 329 23.1
CBR_g8519 Chara braunii HOM05D000372 ORTHO05D004502 1.1e-07 62.8 190 27.4
Pp3c10_3860 Physcomitrium patens HOM05D000372 ORTHO05D004502 2.5e-07 61.6 138 30.4
Pp3c18_2110 Physcomitrium patens HOM05D000372 ORTHO05D004502 2.5e-07 61.6 278 22.7
Ciclev10026412m.g Citrus clementina HOM05D000372 ORTHO05D004502 5.6e-07 60.5 92 35.9
Mapoly0075s0036 Marchantia polymorpha HOM05D000372 ORTHO05D002769 5.6e-07 60.5 150 30.0
CBR_g8523 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-07 60.1 123 30.9
AagrBONN_evm.TU.Sc2ySwM_368.2617 Anthoceros agrestis HOM05D000372 ORTHO05D004502 1.2e-06 59.3 116 34.5
ClCG02G014910 Citrullus lanatus HOM05D000372 ORTHO05D002769 1.2e-06 59.3 137 29.9
Ciclev10026413m.g Citrus clementina HOM05D000372 ORTHO05D004502 1.2e-06 59.3 93 36.6
SEGI_23939 Sequoiadendron giganteum HOM05D000372 ORTHO05D002769 1.6e-06 58.9 128 29.7
SEGI_05175 Sequoiadendron giganteum HOM05D000372 ORTHO05D002769 2.1e-06 58.5 128 29.7
CBR_g8511 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-06 58.2 100 33.0
Pp3c7_17730 Physcomitrium patens HOM05D000372 ORTHO05D004502 6.2e-06 57.0 100 33.0


User provided reference genes

Program Settings