Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28835 Sequoiadendron giganteum HOM05D004829 ORTHO05D006212 1.0e-108 396.7 199 100.0
Dinv02919 Davidia involucrata HOM05D004829 ORTHO05D006212 2.8e-42 176.0 138 63.8
Dinv06747 Davidia involucrata HOM05D004829 ORTHO05D006212 2.8e-42 176.0 138 63.8
Manes.16G050400 Manihot esculenta HOM05D004829 ORTHO05D006212 2.8e-42 176.0 138 64.5
Sopen02g017510 Solanum pennellii HOM05D004829 ORTHO05D006212 3.7e-42 175.6 172 53.5
Solyc02g068380.3 Solanum lycopersicum HOM05D004829 ORTHO05D006212 4.8e-42 175.3 172 53.5
PGSC0003DMG400009430 Solanum tuberosum HOM05D004829 ORTHO05D006212 8.2e-42 174.5 172 52.9
FAN25G0809 Fragaria x ananassa HOM05D004829 ORTHO05D006212 1.1e-41 174.1 138 60.1
Nitab4.5_0000973g0030 Nicotiana tabacum HOM05D004829 ORTHO05D006212 1.1e-41 174.1 172 53.5
Potri.001G160100 Populus trichocarpa HOM05D004829 ORTHO05D006212 1.1e-41 174.1 170 54.7
RcHm_v2.0_Chr5g0020791 Rosa chinensis HOM05D004829 ORTHO05D006212 1.4e-41 173.7 138 59.4
SGA_v2.0_scaffold175G39334 Striga asiatica HOM05D004829 ORTHO05D006212 1.4e-41 173.7 172 54.1
ECA246G2495 Erigeron canadensis HOM05D004829 ORTHO05D006212 1.8e-41 173.3 169 56.2
Lj1C1148G3 Lonicera japonica HOM05D004829 ORTHO05D006212 1.8e-41 173.3 170 54.7
PGR004G1679 Punica granatum HOM05D004829 ORTHO05D006212 1.8e-41 173.3 170 53.5
TWI38G0011 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 1.8e-41 173.3 138 63.0
AUR62042800 Chenopodium quinoa HOM05D004829 ORTHO05D006212 2.4e-41 172.9 147 60.5
Nitab4.5_0000443g0210 Nicotiana tabacum HOM05D004829 ORTHO05D006212 2.4e-41 172.9 172 52.9
CAN.G883.4 Capsicum annuum HOM05D004829 ORTHO05D006212 3.1e-41 172.6 172 52.3
Ciclev10015120m.g Citrus clementina HOM05D004829 ORTHO05D006212 3.1e-41 172.6 170 51.8
Gohir.A12G049400 Gossypium hirsutum HOM05D004829 ORTHO05D006212 3.1e-41 172.6 138 61.6
Gorai.008G050700 Gossypium raimondii HOM05D004829 ORTHO05D006212 3.1e-41 172.6 138 61.6
Hma1.2p1_0088F.1_g045100 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 4.1e-41 172.2 169 55.6
Hma1.2p1_0088F.1_g045110 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 4.1e-41 172.2 169 55.6
FvH4_3g12850 Fragaria vesca HOM05D004829 ORTHO05D006212 5.3e-41 171.8 138 59.4
TAR624G1024 Trochodendron aralioides HOM05D004829 ORTHO05D006212 5.3e-41 171.8 166 55.4
Prupe.4G116700 Prunus persica HOM05D004829 ORTHO05D006212 9.1e-41 171.0 138 58.7
TWI63G0224 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 9.1e-41 171.0 138 63.0
Atru.chr10.381 Acer truncatum HOM05D004829 ORTHO05D006212 1.2e-40 170.6 169 53.3
EL10Ac7g17240 Beta vulgaris HOM05D004829 ORTHO05D006212 1.2e-40 170.6 170 52.9
AUR62040483 Chenopodium quinoa HOM05D004829 ORTHO05D006212 1.2e-40 170.6 147 59.2
Gohir.D12G047800 Gossypium hirsutum HOM05D004829 ORTHO05D006212 1.2e-40 170.6 138 60.9
MD10G1228200 Malus domestica HOM05D004829 ORTHO05D006212 1.2e-40 170.6 169 51.5
RcHm_v2.0_Chr1g0315031 Rosa chinensis HOM05D004829 ORTHO05D006212 1.6e-40 170.2 138 58.7
Migut.M02005 Erythranthe guttata HOM05D004829 ORTHO05D006212 2.0e-40 169.9 172 52.3
FAN11G0705 Fragaria x ananassa HOM05D004829 ORTHO05D006212 2.0e-40 169.9 137 59.1
GSVIVG01012140001 Vitis vinifera HOM05D004829 ORTHO05D006212 2.0e-40 169.9 166 53.6
PSO675G5466 Papaver somniferum HOM05D004829 ORTHO05D006212 2.7e-40 169.5 166 54.8
Cfa000658 Carpinus fangiana HOM05D004829 ORTHO05D006212 3.5e-40 169.1 169 52.7
FAN21G1515 Fragaria x ananassa HOM05D004829 ORTHO05D006212 4.5e-40 168.7 137 59.1
Glyma.09G050800 Glycine max HOM05D004829 ORTHO05D006212 4.5e-40 168.7 140 60.7
RcHm_v2.0_Chr1g0315311 Rosa chinensis HOM05D004829 ORTHO05D006212 4.5e-40 168.7 150 57.3
RcHm_v2.0_Chr5g0020891 Rosa chinensis HOM05D004829 ORTHO05D006212 4.5e-40 168.7 138 58.7
ATR0752G197 Amborella trichopoda HOM05D004829 ORTHO05D006212 5.9e-40 168.3 168 50.6
Haze_06166 Corylus avellana HOM05D004829 ORTHO05D006212 7.7e-40 167.9 138 59.4
HanXRQChr12g0378241 Helianthus annuus HOM05D004829 ORTHO05D006212 7.7e-40 167.9 169 55.0
Thecc.02G004600 Theobroma cacao HOM05D004829 ORTHO05D006212 7.7e-40 167.9 138 59.4
COL.COLO4_18027 Corchorus olitorius HOM05D004829 ORTHO05D006212 1.0e-39 167.5 169 52.7
Glyma.15G156900 Glycine max HOM05D004829 ORTHO05D006212 1.3e-39 167.2 172 52.9
Duzib132G0434 Durio zibethinus HOM05D004829 ORTHO05D006212 1.7e-39 166.8 138 59.4
Rhsim02G0252000 Rhododendron simsii HOM05D004829 ORTHO05D006212 1.7e-39 166.8 135 61.5
Sed0007455 Sechium edule HOM05D004829 ORTHO05D006212 1.7e-39 166.8 138 59.4
arahy.Tifrunner.gnm1.ann1.503GVQ Arachis hypogaea HOM05D004829 ORTHO05D006212 2.2e-39 166.4 173 52.0
arahy.Tifrunner.gnm1.ann1.84NU8G Arachis hypogaea HOM05D004829 ORTHO05D006212 2.2e-39 166.4 173 52.0
QL11p012432 Quercus lobata HOM05D004829 ORTHO05D006212 2.2e-39 166.4 138 59.4
RcHm_v2.0_Chr1g0315381 Rosa chinensis HOM05D004829 ORTHO05D006212 2.2e-39 166.4 150 56.7
Aqoxy1G01392 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 2.9e-39 166.0 138 58.7
CsaV3_1G010130 Cucumis sativus L. HOM05D004829 ORTHO05D006212 2.9e-39 166.0 138 58.0
PSO541G1671 Papaver somniferum HOM05D004829 ORTHO05D006212 2.9e-39 166.0 166 54.2
MELO3C002403.2 Cucumis melo HOM05D004829 ORTHO05D006212 3.8e-39 165.6 138 58.7
VMungo1309G0038 Vigna mungo HOM05D004829 ORTHO05D006212 3.8e-39 165.6 172 52.3
CANSAT35G0413 Cannabis sativa HOM05D004829 ORTHO05D006212 5.0e-39 165.2 170 49.4
THA.LOC104811816 Tarenaya hassleriana HOM05D004829 ORTHO05D006212 6.5e-39 164.9 166 53.6
Lalb_Chr15g0083721 Lupinus albus HOM05D004829 ORTHO05D006212 8.5e-39 164.5 140 60.0
Sc05g0004770 Simmondsia chinensis HOM05D004829 ORTHO05D006212 8.5e-39 164.5 138 58.0
Cc09_g05280 Coffea canephora HOM05D004829 ORTHO05D006212 1.1e-38 164.1 137 56.9
Lsat_1_v5_gn_5_44281 Lactuca sativa HOM05D004829 ORTHO05D006212 1.5e-38 163.7 166 53.6
ClCG03G004200 Citrullus lanatus HOM05D004829 ORTHO05D006212 1.9e-38 163.3 170 50.6
DCAR_004342 Daucus carota HOM05D004829 ORTHO05D006212 1.9e-38 163.3 166 53.6
Thhalv10024702m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 1.9e-38 163.3 165 53.9
Medtr2g035405 Medicago truncatula HOM05D004829 ORTHO05D006212 1.9e-38 163.3 173 52.6
Actinidia33705 Actinidia chinensis HOM05D004829 ORTHO05D006212 2.5e-38 162.9 166 53.0
Sp7g18530 Schrenkiella parvula HOM05D004829 ORTHO05D006212 4.2e-38 162.2 166 53.6
AL7G33780 Arabidopsis lyrata HOM05D004829 ORTHO05D006212 5.5e-38 161.8 166 53.6
Lalb_Chr18g0052051 Lupinus albus HOM05D004829 ORTHO05D006212 7.2e-38 161.4 172 51.2
CSS0024116 Camellia sinensis var. sinensis HOM05D004829 ORTHO05D006212 9.4e-38 161.0 138 58.0
CARHR226880 Cardamine hirsuta HOM05D004829 ORTHO05D006212 9.4e-38 161.0 166 53.0
Peaxi162Scf00981g00019 Petunia axillaris HOM05D004829 ORTHO05D006212 9.4e-38 161.0 135 56.3
AT4G20070 Arabidopsis thaliana HOM05D004829 ORTHO05D006212 1.2e-37 160.6 166 52.4
Ca_01990_v3 Cicer arietinum L. HOM05D004829 ORTHO05D006212 1.2e-37 160.6 173 52.0
Sabra01G0132000 Salix brachista HOM05D004829 ORTHO05D006212 1.2e-37 160.6 180 50.6
Carub.0007s2106 Capsella rubella HOM05D004829 ORTHO05D006212 1.6e-37 160.2 166 53.0
Lj6g0020245 Lotus japonicus HOM05D004829 ORTHO05D006212 2.1e-37 159.8 172 50.6
Hund18001 Selenicereus undatus HOM05D004829 ORTHO05D006212 2.1e-37 159.8 163 50.9
TPR.G135 Trifolium pratense HOM05D004829 ORTHO05D006212 2.1e-37 159.8 173 52.0
unitig_92.g28192 Utricularia gibba HOM05D004829 ORTHO05D006212 3.6e-37 159.1 138 57.2
Thhalv10025370m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 8.0e-37 157.9 165 53.3
MSTRG.21238 Avicennia marina HOM05D004829 ORTHO05D006212 1.0e-36 157.5 168 50.0
BcaNung03491 Brassica carinata HOM05D004829 ORTHO05D006212 1.0e-36 157.5 166 52.4
A03p52300 Brassica napus HOM05D004829 ORTHO05D006212 1.0e-36 157.5 166 52.4
Aa31LG6G2480 Aethionema arabicum HOM05D004829 ORTHO05D006212 1.4e-36 157.1 166 50.6
BcaC06g30644 Brassica carinata HOM05D004829 ORTHO05D006212 1.4e-36 157.1 166 51.8
BraA03t14305Z Brassica rapa HOM05D004829 ORTHO05D006212 1.4e-36 157.1 137 58.4
BolC7t45575H Brassica oleracea HOM05D004829 ORTHO05D006212 2.3e-36 156.4 166 51.8
MBI18_g00538_MAGBIO Magnolia biondii HOM05D004829 ORTHO05D006212 2.3e-36 156.4 196 45.9
RcHm_v2.0_Chr1g0315541 Rosa chinensis HOM05D004829 ORTHO05D006212 3.0e-36 156.0 123 58.5
C07p50740 Brassica napus HOM05D004829 ORTHO05D006212 8.8e-36 154.5 137 56.9
HPP92_026370 Vanilla planifolia HOM05D004829 ORTHO05D006212 8.8e-36 154.5 140 54.3
Pp3c13_1740 Physcomitrium patens HOM05D004829 ORTHO05D006212 2.0e-35 153.3 143 53.8
RcHm_v2.0_Chr1g0315241 Rosa chinensis HOM05D004829 ORTHO05D006212 2.0e-35 153.3 123 56.9
HPP92_016420 Vanilla planifolia HOM05D004829 ORTHO05D006212 2.0e-35 153.3 140 54.3
Eucgr.D00017 Eucalyptus grandis HOM05D004829 ORTHO05D006212 3.4e-35 152.5 166 50.6
QL11p012412 Quercus lobata HOM05D004829 ORTHO05D006212 5.7e-35 151.8 138 56.5
RcHm_v2.0_Chr1g0315611 Rosa chinensis HOM05D004829 ORTHO05D006212 4.8e-34 148.7 126 56.3
RcHm_v2.0_Chr1g0315091 Rosa chinensis HOM05D004829 ORTHO05D006212 1.8e-33 146.7 124 57.3
RcHm_v2.0_Chr1g0315201 Rosa chinensis HOM05D004829 ORTHO05D006212 4.1e-33 145.6 136 55.1
SMO117G0201 Selaginella moellendorffii HOM05D004829 ORTHO05D006212 4.1e-33 145.6 177 47.5
RcHm_v2.0_Chr5g0021521 Rosa chinensis HOM05D004829 ORTHO05D006212 5.4e-33 145.2 112 58.9
Pp3c3_1160 Physcomitrium patens HOM05D004829 ORTHO05D006212 1.6e-32 143.7 143 51.0
AagrBONN_evm.TU.Sc2ySwM_344.4392 Anthoceros agrestis HOM05D004829 ORTHO05D006212 3.5e-32 142.5 140 48.6
Mapoly0026s0071 Marchantia polymorpha HOM05D004829 ORTHO05D006212 5.9e-32 141.7 140 50.0
Os06g0665500 Oryza sativa ssp. japonica HOM05D004829 ORTHO05D006212 5.9e-32 141.7 170 43.5
Zm00001eb389820 Zea mays HOM05D004829 ORTHO05D006212 1.3e-31 140.6 139 47.5
RcHm_v2.0_Chr1g0315471 Rosa chinensis HOM05D004829 ORTHO05D006212 5.5e-30 135.2 130 52.3
RcHm_v2.0_Chr1g0315061 Rosa chinensis HOM05D004829 ORTHO05D006212 2.2e-26 123.2 124 51.6
RcHm_v2.0_Chr1g0315441 Rosa chinensis HOM05D004829 ORTHO05D006212 9.2e-25 117.9 96 58.3
Oeu046922.1 Olea europaea HOM05D004829 ORTHO05D006212 5.9e-24 115.2 100 56.0
Lalb_Chr02g0154131 Lupinus albus HOM05D004829 ORTHO05D006212 3.6e-21 105.9 98 54.1
RcHm_v2.0_Chr5g0021441 Rosa chinensis HOM05D004829 ORTHO05D006212 4.7e-21 105.5 61 75.4
RcHm_v2.0_Chr1g0315581 Rosa chinensis HOM05D004829 ORTHO05D006212 6.1e-21 105.1 102 52.0
Cre13.g580700 Chlamydomonas reinhardtii HOM05D004829 ORTHO05D006212 3.0e-20 102.8 147 39.5
CDE03G0346 Ceratophyllum demersum HOM05D004829 ORTHO05D006212 3.7e-18 95.9 94 48.9
RcHm_v2.0_Chr5g0029451 Rosa chinensis HOM05D004829 ORTHO05D006212 1.8e-17 93.6 64 67.2
RcHm_v2.0_Chr1g0315141 Rosa chinensis HOM05D004829 ORTHO05D006212 2.0e-16 90.1 101 47.5
MCO01G784 Micromonas commoda HOM05D004829 ORTHO05D006212 7.8e-16 88.2 155 35.5
Ah.15g091890 Amaranthus hybridus HOM05D004829 ORTHO05D006212 3.1e-12 76.3 81 48.1
Aqoxy1G01394 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 5.2e-12 75.5 59 59.3
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 3.7e-10 69.3 130 30.0
RcHm_v2.0_Chr1g0315151 Rosa chinensis HOM05D004829 ORTHO05D006212 1.5e-06 57.4 36 66.7


User provided reference genes

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