Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 4186.7 2126 100.0
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1144.0 2121 36.7
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1114.8 2125 35.7
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1114.4 2134 35.3
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1114.4 2136 36.0
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1109.4 2112 36.1
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1108.2 2141 35.7
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1083.9 2121 35.6
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1083.2 2125 35.6
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1082.4 2126 34.6
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1078.5 2133 35.6
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1075.5 2172 34.9
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1075.5 2130 34.9
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 1.0e-310 1071.2 2131 34.9
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 1.6e-308 1063.9 2135 35.5
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 4.6e-308 1062.4 2147 35.3
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 1.3e-307 1060.8 2129 35.1
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 3.9e-307 1059.3 2133 34.8
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 6.7e-307 1058.5 2142 35.2
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 1.5e-303 1047.3 2129 34.7
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 5.8e-303 1045.4 2129 34.0
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 2.2e-302 1043.5 2125 34.4
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 3.8e-302 1042.7 2127 34.6
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-300 1037.7 2135 34.6
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 1.6e-300 1037.3 2164 34.3
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 3.0e-299 1033.1 2120 34.4
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 2.5e-298 1030.0 2148 33.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 7.4e-298 1028.5 2107 33.7
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 1.6e-297 1027.3 2140 34.9
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 2.2e-297 1026.9 2122 33.7
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 3.7e-297 1026.2 2142 34.0
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 1.8e-296 1023.8 2149 34.9
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 4.1e-296 1022.7 2135 34.3
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 4.5e-295 1019.2 2150 33.5
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 1.3e-294 1017.7 2150 33.5
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 2.5e-293 1013.4 2131 34.4
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 3.9e-291 1006.1 2126 33.4
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 4.3e-290 1002.7 2129 33.5
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 7.4e-290 1001.9 2131 33.5
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 3.1e-288 996.5 2143 33.2
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 3.1e-288 996.5 2145 33.3
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.9e-288 995.3 2133 32.9
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 1.1e-285 988.0 2127 33.1
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 1.4e-285 987.6 2125 32.4
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 2.5e-285 986.9 2136 33.1
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 4.2e-285 986.1 2139 33.4
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 3.6e-284 983.0 2126 33.5
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 1.1e-282 978.0 2157 32.6
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 5.7e-282 975.7 2145 33.4
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 5.7e-282 975.7 2147 33.2
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 4.5e-279 966.1 2131 32.8
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 2.5e-277 960.3 2122 33.1
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 5.5e-277 959.1 2137 32.9
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 3.6e-276 956.4 2133 32.8
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 1.5e-274 951.0 2143 32.6
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 2.0e-274 950.7 2125 32.8
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 1.7e-273 947.6 2136 33.9
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 2.8e-273 946.8 2117 33.5
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 1.2e-271 941.4 2086 33.5
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 1.6e-271 941.0 2131 33.3
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 2.6e-271 940.3 2135 32.7
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 5.9e-271 939.1 2167 32.4
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 3.6e-268 929.9 2154 32.7
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 6.1e-268 929.1 2092 32.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 8.0e-268 928.7 2133 32.1
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 1.2e-266 924.9 2109 32.5
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 1.5e-266 924.5 2086 33.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.7e-265 921.0 2204 32.2
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 1.4e-264 917.9 2127 33.3
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 4.1e-264 916.4 2115 32.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 5.3e-264 916.0 2094 32.9
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 2.0e-263 914.1 2102 32.3
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 5.9e-263 912.5 2118 32.1
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 3.8e-262 909.8 2102 32.3
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 5.0e-262 909.4 2088 32.7
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 2.1e-260 904.0 2111 31.1
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 6.1e-260 902.5 2108 32.8
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 8.8e-259 898.7 2096 33.0
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 1.2e-258 898.3 2099 32.8
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 1.5e-258 897.9 2099 32.8
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 2.0e-258 897.5 2113 32.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 5.4e-256 889.4 2117 31.9
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 3.3e-253 880.2 2050 32.6
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 2.6e-250 870.5 2096 31.2
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 1.6e-247 861.3 2070 32.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 5.9e-247 859.4 2118 30.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.1e-245 855.1 2085 30.9
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 1.6e-244 851.3 2092 32.0
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 1.8e-243 847.8 2257 30.7
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 2.0e-239 834.3 2052 31.7
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 1.3e-230 805.1 1543 35.6
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 8.6e-230 802.4 1542 35.8
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 8.9e-227 792.3 2166 29.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 4.4e-218 763.5 1854 31.8
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 5.4e-216 756.5 1851 31.6
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 6.0e-207 726.5 1557 32.1
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 3.4e-202 710.7 1923 30.4
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.3e-193 682.2 1854 30.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 2.2e-180 638.3 1958 28.9
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.2e-176 624.4 1760 29.2
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 3.9e-166 590.9 1792 28.9
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 3.8e-161 574.3 2103 26.8
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 1.3e-137 496.1 1332 29.7
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 3.6e-111 408.3 567 42.0
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.0e-105 388.7 393 52.2
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.0e-97 363.6 377 49.3
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-97 363.2 418 46.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.1e-91 343.6 2102 21.9
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 6.4e-84 317.8 335 50.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 4.0e-78 298.5 1194 25.3
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 2.1e-74 286.2 265 53.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 4.6e-74 285.0 370 44.3
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 3.3e-72 278.9 264 52.3
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-71 276.9 351 45.0
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.1e-70 271.9 726 30.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.1e-50 206.5 177 52.5
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.3e-48 199.1 510 32.2
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.8e-46 193.4 417 34.1
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 4.0e-41 175.6 196 48.5
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 5.0e-36 158.7 181 48.1
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.5e-35 157.1 530 28.1
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 8.8e-33 147.9 274 36.9
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.7e-31 142.5 214 42.5
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 5.0e-28 132.1 227 36.6
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-24 120.9 508 25.8
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.2e-23 116.7 80 63.8
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.9e-23 115.5 286 30.4
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-23 115.2 577 23.9
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 1.0e-20 107.8 319 27.0
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.9e-15 89.7 174 36.8
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.2e-13 84.3 125 39.2
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.8e-10 73.2 55 61.8
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 8.0e-10 71.6 112 38.4
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 8.9e-09 68.2 55 61.8
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 2.0e-08 67.0 58 56.9
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.4e-08 65.9 57 61.4
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 4.4e-08 65.9 52 61.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 4.4e-08 65.9 52 61.5
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 4.4e-08 65.9 52 61.5
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.1e-06 61.2 290 22.8
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.9e-06 60.5 112 33.0
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 7.0e-06 58.5 46 52.2


User provided reference genes

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