Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28657 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 5.8e-77 290.8 146 100.0
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 1.0e-41 173.7 92 92.4
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 2.3e-41 172.6 93 89.2
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 2.3e-41 172.6 92 91.3
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 2.3e-41 172.6 92 91.3
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 3.0e-41 172.2 92 90.2
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 3.0e-41 172.2 91 91.2
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.9e-41 171.8 92 90.2
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 3.9e-41 171.8 92 90.2
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 5.1e-41 171.4 108 78.7
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
TAR636G0028 Trochodendron aralioides HOM05D003314 ORTHO05D002223 5.1e-41 171.4 92 90.2
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 5.1e-41 171.4 92 90.2
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 6.7e-41 171.0 92 90.2
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 6.7e-41 171.0 91 91.2
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 6.7e-41 171.0 92 89.1
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 6.7e-41 171.0 92 89.1
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 6.7e-41 171.0 92 90.2
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 6.7e-41 171.0 92 90.2
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 6.7e-41 171.0 92 90.2
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 8.7e-41 170.6 92 90.2
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 8.7e-41 170.6 92 90.2
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 8.7e-41 170.6 92 90.2
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 8.7e-41 170.6 92 89.1
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 90.2
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 1.1e-40 170.2 92 89.1
Cpa.g.sc2.426 Carica papaya HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 89.1
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 89.1
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 89.1
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 89.1
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 88.0
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 88.0
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 88.0
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 90.2
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 1.5e-40 169.9 92 89.1
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 1.9e-40 169.5 92 89.1
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 1.9e-40 169.5 92 88.0
MD11G1068700 Malus domestica HOM05D003314 ORTHO05D004164 1.9e-40 169.5 92 90.2
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 1.9e-40 169.5 92 90.2
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 1.9e-40 169.5 92 89.1
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 1.9e-40 169.5 91 87.9
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.5e-40 169.1 91 90.1
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.5e-40 169.1 92 88.0
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 3.3e-40 168.7 90 90.0
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 3.3e-40 168.7 92 89.1
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 3.3e-40 168.7 92 88.0
CDE12G0377 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 4.3e-40 168.3 92 89.1
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 5.7e-40 167.9 92 88.0
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 5.7e-40 167.9 92 89.1
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 5.7e-40 167.9 91 89.0
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 5.7e-40 167.9 92 88.0
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 5.7e-40 167.9 90 90.0
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 5.7e-40 167.9 92 89.1
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 5.7e-40 167.9 92 90.2
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 7.4e-40 167.5 90 88.9
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 9.7e-40 167.2 90 88.9
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 9.7e-40 167.2 90 88.9
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 9.7e-40 167.2 108 75.0
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 9.7e-40 167.2 92 85.9
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 1.3e-39 166.8 90 87.8
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 1.3e-39 166.8 90 87.8
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 1.3e-39 166.8 90 87.8
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 1.3e-39 166.8 90 87.8
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 1.3e-39 166.8 90 87.8
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 1.3e-39 166.8 90 87.8
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 1.3e-39 166.8 91 87.9
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 2.2e-39 166.0 92 84.8
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 2.2e-39 166.0 90 88.9
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 2.2e-39 166.0 92 88.0
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 85.9
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 88.0
Sp1g05820 Schrenkiella parvula HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 2.8e-39 165.6 92 87.0
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.7e-39 165.2 92 85.9
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 3.7e-39 165.2 97 85.6
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 3.7e-39 165.2 89 88.8
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 3.7e-39 165.2 91 85.7
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 3.7e-39 165.2 108 76.9
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 4.8e-39 164.9 92 84.8
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 4.8e-39 164.9 92 85.9
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 4.8e-39 164.9 92 85.9
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 6.3e-39 164.5 90 86.7
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 6.3e-39 164.5 92 85.9
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 6.3e-39 164.5 92 85.9
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 6.3e-39 164.5 92 85.9
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 6.3e-39 164.5 92 85.9
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 6.3e-39 164.5 92 85.9
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 8.2e-39 164.1 91 84.6
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 8.2e-39 164.1 92 89.1
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 8.2e-39 164.1 92 84.8
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 1.1e-38 163.7 89 87.6
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 1.1e-38 163.7 91 85.7
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.1e-38 163.7 92 85.9
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 1.4e-38 163.3 92 85.9
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 1.4e-38 163.3 90 84.4
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 1.8e-38 162.9 92 85.9
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 1.8e-38 162.9 92 85.9
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 1.8e-38 162.9 92 85.9
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 1.8e-38 162.9 92 85.9
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 1.8e-38 162.9 92 85.9
Lj2A1086T64 Lonicera japonica HOM05D003314 ORTHO05D004164 5.3e-38 161.4 98 82.7
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 6.9e-38 161.0 90 85.6
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 6.9e-38 161.0 92 83.7
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 6.9e-38 161.0 90 84.4
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 5.9e-37 157.9 92 82.6
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 5.9e-37 157.9 92 82.6
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 5.9e-37 157.9 92 82.6
SEGI_19911 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 5.9e-37 157.9 93 82.8
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 1.4e-35 153.3 81 91.4
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 3.2e-35 152.1 81 90.1
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 2.7e-34 149.1 85 83.5
Actinidia32630 Actinidia chinensis HOM05D003314 ORTHO05D004164 1.0e-28 130.6 80 78.8
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 2.2e-28 129.4 69 89.9
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 1.6e-26 123.2 67 86.6
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 3.6e-26 122.1 69 85.5
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 6.1e-26 121.3 91 61.5
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 4.8e-23 111.7 75 68.0
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 1.3e-20 103.6 87 52.9
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 3.8e-20 102.1 117 51.3
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.1e-19 100.5 80 55.0
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 1.8e-17 93.2 84 56.0
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.0e-17 92.4 88 52.3
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 2.4e-14 82.8 76 48.7
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 7.0e-14 81.3 44 88.6
MCO04G290 Micromonas commoda HOM05D003314 ORTHO05D004164 3.8e-12 75.5 85 41.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.6e-10 70.1 89 42.7
Cfa024020 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.0e-09 67.4 76 40.8
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.2e-08 63.9 47 66.0
PSO302G0047 Papaver somniferum HOM05D003314 ORTHO05D004164 3.3e-08 62.4 55 63.6
HanXRQChr10g0315241 Helianthus annuus HOM05D003314 ORTHO05D004164 7.5e-08 61.2 38 73.7
HanXRQChr05g0144901 Helianthus annuus HOM05D003314 ORTHO05D222853 1.4e-06 57.0 62 48.4


User provided reference genes

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