Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 4.9e-126 454.5 238 100.0
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 5.8e-58 228.4 174 71.8
SEGI_15991 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.9e-38 162.5 160 60.0
SEGI_35668 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.4e-27 127.5 70 85.7
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 3.1e-19 99.8 253 28.1
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.0e-18 97.1 249 26.9
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 7.6e-18 95.1 260 30.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.9e-18 94.7 159 40.3
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.2e-17 93.6 128 40.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.2e-17 93.6 128 40.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.8e-17 92.8 130 40.8
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.9e-17 92.4 112 45.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 6.4e-17 92.0 127 41.7
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.4e-17 92.0 128 39.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.4e-17 92.0 83 50.6
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.4e-17 91.7 222 27.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.9e-16 90.5 83 49.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.9e-16 90.5 168 37.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.9e-16 90.5 130 40.0
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.2e-16 89.7 84 47.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.2e-16 89.7 83 50.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 4.2e-16 89.4 85 48.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.4e-16 89.0 85 48.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 5.4e-16 89.0 114 43.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 7.1e-16 88.6 130 40.0
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 7.1e-16 88.6 221 31.7
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 7.1e-16 88.6 221 31.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.1e-16 88.6 83 50.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 7.1e-16 88.6 83 50.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 7.1e-16 88.6 117 41.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 7.1e-16 88.6 85 48.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 9.3e-16 88.2 122 38.5
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 9.3e-16 88.2 112 40.2
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.3e-16 88.2 107 43.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.3e-16 88.2 133 43.6
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 9.3e-16 88.2 83 47.0
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.2e-15 87.8 152 36.2
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.2e-15 87.8 83 49.4
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.2e-15 87.8 153 37.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.2e-15 87.8 83 49.4
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-15 87.4 139 37.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-15 87.4 139 37.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.7e-15 86.7 128 38.3
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.7e-15 86.7 85 45.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.7e-15 86.7 84 46.4
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 3.5e-15 86.3 150 34.7
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.5e-15 86.3 83 45.8
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.5e-15 86.3 83 48.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-15 86.3 131 41.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 3.5e-15 86.3 83 48.2
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.6e-15 85.9 232 30.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.6e-15 85.9 83 47.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.6e-15 85.9 83 47.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.0e-15 85.5 190 33.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.0e-15 85.5 127 36.2
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.0e-15 85.5 83 47.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 7.9e-15 85.1 114 41.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 7.9e-15 85.1 116 40.5
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 7.9e-15 85.1 148 37.8
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.0e-14 84.7 140 34.3
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.0e-14 84.7 119 39.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.0e-14 84.7 122 38.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.3e-14 84.3 83 44.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.8e-14 84.0 263 25.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.8e-14 84.0 83 47.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.8e-14 84.0 84 42.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-14 83.6 83 47.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 3.0e-14 83.2 125 38.4
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.9e-14 82.8 83 47.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 5.1e-14 82.4 85 43.5
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.1e-14 82.4 99 40.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 6.7e-14 82.0 85 43.5
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 6.7e-14 82.0 85 43.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.7e-14 82.0 82 46.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 8.7e-14 81.6 83 45.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-13 81.3 83 45.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-13 81.3 83 43.4
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-13 81.3 83 47.0
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.5e-13 80.9 279 28.0
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.5e-13 80.9 108 44.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-13 80.9 128 36.7
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-13 80.9 128 36.7
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.5e-13 80.9 83 42.2
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-13 80.5 83 42.2
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.5e-13 80.1 97 39.2
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.5e-13 80.1 131 35.9
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.5e-13 80.1 84 45.2
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.3e-13 79.7 122 37.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.3e-13 79.7 117 38.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 3.3e-13 79.7 124 35.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 3.3e-13 79.7 129 35.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 4.3e-13 79.3 128 36.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 4.3e-13 79.3 128 36.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.6e-13 79.0 112 36.6
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 5.6e-13 79.0 84 46.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 9.6e-13 78.2 82 41.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 9.6e-13 78.2 83 41.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.6e-13 78.2 216 31.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 9.6e-13 78.2 190 31.6
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.3e-12 77.8 252 27.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-12 77.8 83 41.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.3e-12 77.8 83 41.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.6e-12 77.4 131 39.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.1e-12 77.0 258 29.5
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.8e-12 76.6 83 42.2
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.8e-12 76.6 125 39.2
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.7e-12 76.3 263 28.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.7e-12 76.3 233 30.5
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 4.8e-12 75.9 141 33.3
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.8e-12 75.9 168 31.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.2e-12 75.5 247 25.9
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 6.2e-12 75.5 86 44.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.2e-12 75.5 84 39.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 6.2e-12 75.5 112 37.5
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.1e-12 75.1 112 36.6
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 8.1e-12 75.1 113 37.2
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 8.1e-12 75.1 118 38.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-11 74.7 128 35.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-11 74.7 128 35.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-11 74.7 128 35.2
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-11 74.7 153 28.8
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-11 74.3 163 32.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.4e-11 74.3 136 33.1
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.4e-11 74.3 159 32.7
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.4e-11 74.3 196 28.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.8e-11 73.9 112 36.6
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.4e-11 73.6 87 44.8
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.4e-11 73.6 87 44.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.4e-11 73.6 132 34.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.0e-11 72.8 215 30.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 4.0e-11 72.8 104 39.4
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.0e-11 72.8 224 28.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 4.0e-11 72.8 222 27.0
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 5.3e-11 72.4 85 43.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.3e-11 72.4 155 32.9
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 6.9e-11 72.0 85 45.9
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.2e-10 71.2 87 39.1
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.5e-10 70.9 85 42.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.5e-10 70.9 220 26.4
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.0e-10 70.5 83 42.2
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.0e-10 70.5 102 37.3
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.6e-10 70.1 102 35.3
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 3.4e-10 69.7 154 26.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 7.6e-10 68.6 136 36.8
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 7.6e-10 68.6 214 31.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-09 68.2 115 33.9
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.0e-09 68.2 92 40.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.0e-09 68.2 199 29.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.0e-09 68.2 142 35.9
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.9e-09 66.6 137 35.0
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.9e-09 66.6 137 35.0
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.9e-09 66.6 141 31.9
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.9e-09 66.6 84 36.9
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.8e-09 66.2 70 44.3
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.8e-09 66.2 87 39.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 3.8e-09 66.2 169 30.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.9e-09 65.9 118 37.3
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 8.4e-09 65.1 215 30.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 8.4e-09 65.1 148 33.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.5e-08 63.5 147 29.9
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.5e-08 63.5 57 54.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.5e-08 62.4 84 38.1
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 7.1e-08 62.0 84 36.9
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.2e-07 61.2 55 52.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.1e-07 60.5 212 24.5
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.7e-07 60.1 62 45.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 4.6e-07 59.3 83 36.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 6.0e-07 58.9 81 37.0
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.9e-07 58.5 124 33.9
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 7.9e-07 58.5 81 46.9
CBR_g46437 Chara braunii HOM05D001925 ORTHO05D004257 1.0e-06 58.2 97 35.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.8e-06 57.4 133 29.3
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.8e-06 57.4 201 25.9
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.3e-06 57.0 161 29.2
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.7e-06 55.5 91 35.2
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 8.7e-06 55.1 147 32.0
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 8.7e-06 55.1 109 32.1


User provided reference genes

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