Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28516 Sequoiadendron giganteum HOM05D004946 ORTHO05D006101 3.1e-51 204.9 109 100.0
Mapoly0070s0034 Marchantia polymorpha HOM05D004266 ORTHO05D005151 1.4e-14 83.2 94 55.3
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 1.8e-14 82.8 66 74.2
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 3.0e-14 82.0 65 70.8
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 5.2e-14 81.3 66 68.2
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 8.9e-14 80.5 66 68.2
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 8.9e-14 80.5 72 62.5
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 8.9e-14 80.5 60 73.3
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 8.9e-14 80.5 75 58.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 8.9e-14 80.5 66 68.2
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 1.2e-13 80.1 72 62.5
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 2.6e-13 79.0 66 66.7
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.6e-13 79.0 66 66.7
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.6e-13 79.0 66 66.7
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 2.6e-13 79.0 75 60.0
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 3.4e-13 78.6 83 59.0
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 3.4e-13 78.6 66 65.2
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 3.4e-13 78.6 66 66.7
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.4e-13 78.6 66 66.7
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.4e-13 78.6 66 66.7
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 3.4e-13 78.6 78 60.3
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 4.4e-13 78.2 66 66.7
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 4.4e-13 78.2 67 65.7
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 4.4e-13 78.2 66 66.7
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 4.4e-13 78.2 65 66.2
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 5.8e-13 77.8 67 65.7
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 5.8e-13 77.8 72 59.7
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 5.8e-13 77.8 54 75.9
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 5.8e-13 77.8 54 75.9
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 7.5e-13 77.4 85 55.3
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 7.5e-13 77.4 72 59.7
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 7.5e-13 77.4 65 64.6
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 7.5e-13 77.4 71 64.8
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 7.5e-13 77.4 61 67.2
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 7.5e-13 77.4 61 67.2
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 7.5e-13 77.4 66 65.2
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 9.8e-13 77.0 66 65.2
CANSAT80G2575 Cannabis sativa HOM05D004946 ORTHO05D006101 9.8e-13 77.0 66 65.2
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 9.8e-13 77.0 54 74.1
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 9.8e-13 77.0 67 62.7
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 9.8e-13 77.0 67 65.7
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 9.8e-13 77.0 66 65.2
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 1.3e-12 76.6 56 73.2
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 1.3e-12 76.6 56 73.2
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 1.3e-12 76.6 66 63.6
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 1.3e-12 76.6 66 62.1
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 1.7e-12 76.3 54 72.2
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 1.7e-12 76.3 55 70.9
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 2.2e-12 75.9 66 63.6
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 2.2e-12 75.9 66 63.6
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 2.2e-12 75.9 66 65.2
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.2e-12 75.9 60 65.0
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 2.2e-12 75.9 60 65.0
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 2.2e-12 75.9 65 63.1
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.2e-12 75.9 67 62.7
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 2.2e-12 75.9 70 61.4
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 2.2e-12 75.9 67 64.2
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 2.9e-12 75.5 71 63.4
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 2.9e-12 75.5 71 59.2
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 2.9e-12 75.5 66 65.2
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 2.9e-12 75.5 66 65.2
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 3.7e-12 75.1 69 62.3
AagrBONN_evm.TU.Sc2ySwM_228.143 Anthoceros agrestis HOM05D004266 ORTHO05D005151 3.7e-12 75.1 104 50.0
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 3.7e-12 75.1 69 60.9
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 3.7e-12 75.1 66 66.7
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 3.7e-12 75.1 74 62.2
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 3.7e-12 75.1 66 65.2
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 4.9e-12 74.7 56 69.6
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 6.4e-12 74.3 60 70.0
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 8.3e-12 73.9 54 72.2
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 8.3e-12 73.9 48 81.2
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 1.1e-11 73.6 66 60.6
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 1.1e-11 73.6 59 67.8
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 1.4e-11 73.2 66 62.1
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 1.4e-11 73.2 74 58.1
Pp3c14_13370 Physcomitrium patens HOM05D004266 ORTHO05D005151 1.4e-11 73.2 91 52.7
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 1.4e-11 73.2 73 54.8
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 1.9e-11 72.8 74 58.1
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 1.9e-11 72.8 74 58.1
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 1.9e-11 72.8 75 53.3
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 2.4e-11 72.4 67 56.7
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 2.4e-11 72.4 67 56.7
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 2.4e-11 72.4 43 81.4
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 3.2e-11 72.0 69 59.4
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 3.2e-11 72.0 54 64.8
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 3.2e-11 72.0 72 59.7
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 4.1e-11 71.6 73 50.7
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 4.1e-11 71.6 55 70.9
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 4.1e-11 71.6 54 68.5
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 4.1e-11 71.6 54 70.4
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 5.4e-11 71.2 59 62.7
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 5.4e-11 71.2 62 62.9
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 5.4e-11 71.2 66 65.2
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 7.0e-11 70.9 73 57.5
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 7.0e-11 70.9 74 58.1
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 7.0e-11 70.9 59 59.3
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 9.2e-11 70.5 74 56.8
FvH4_3g36821 Fragaria vesca HOM05D004946 ORTHO05D006101 1.6e-10 69.7 82 50.0
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 2.0e-10 69.3 74 55.4
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 2.0e-10 69.3 74 55.4
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.0e-10 69.3 54 68.5
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 2.7e-10 68.9 48 68.8
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 2.7e-10 68.9 60 60.0
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 2.7e-10 68.9 60 60.0
BolC6t39834H Brassica oleracea HOM05D004946 ORTHO05D006101 2.7e-10 68.9 60 60.0
Gohir.A08G094762 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.7e-10 68.9 61 65.6
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 3.5e-10 68.6 60 60.0
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 3.5e-10 68.6 58 63.8
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 4.6e-10 68.2 60 58.3
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 4.6e-10 68.2 60 58.3
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 4.6e-10 68.2 60 58.3
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 6.0e-10 67.8 60 58.3
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 6.0e-10 67.8 62 59.7
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 7.8e-10 67.4 55 65.5
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 1.5e-08 63.2 66 51.5
TAR625G1274 Trochodendron aralioides HOM05D004266 ORTHO05D005151 9.5e-08 60.5 99 42.4
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 1.6e-07 59.7 97 48.5
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 1.6e-07 59.7 91 44.0
TWI34G1000 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 2.1e-07 59.3 102 41.2
Dinv36591 Davidia involucrata HOM05D000943 ORTHO05D005151 6.2e-07 57.8 80 48.8
vmacro01509 Vaccinium macrocarpon HOM05D004266 ORTHO05D005151 6.2e-07 57.8 91 45.1
MSTRG.21597 Avicennia marina HOM05D004266 ORTHO05D005151 8.0e-07 57.4 82 48.8
Ciclev10000749m.g Citrus clementina HOM05D004266 ORTHO05D005151 8.0e-07 57.4 82 47.6
CSS0023855 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 1.8e-06 56.2 100 40.0
DCAR_003088 Daucus carota HOM05D004266 ORTHO05D005151 2.3e-06 55.8 56 48.2
Actinidia24638 Actinidia chinensis HOM05D004266 ORTHO05D005151 3.1e-06 55.5 47 57.4
Migut.N01203 Erythranthe guttata HOM05D004266 ORTHO05D005151 3.1e-06 55.5 99 42.4
MBI17_g21480_MAGBIO Magnolia biondii HOM05D004266 ORTHO05D005151 4.0e-06 55.1 89 42.7
Rhsim11G0089600 Rhododendron simsii HOM05D004266 ORTHO05D005151 4.0e-06 55.1 91 42.9
Hma1.2p1_0276F.1_g111070 Hydrangea macrophylla HOM05D004266 ORTHO05D005151 5.2e-06 54.7 98 39.8
CSS0012598 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 6.8e-06 54.3 98 39.8
CSS0048022 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 6.8e-06 54.3 98 39.8
TWI60G1440 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 6.8e-06 54.3 91 45.1
TAR381G0928 Trochodendron aralioides HOM05D000446 ORTHO05D005151 6.8e-06 54.3 89 43.8
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 8.9e-06 53.9 100 42.0


User provided reference genes

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