Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 6.4e-268 926.8 452 100.0
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 8.2e-106 388.3 467 45.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.3e-103 380.9 475 43.6
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.9e-103 379.8 479 43.4
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.8e-103 379.4 477 43.0
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.1e-102 377.9 392 49.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.5e-102 377.5 390 49.0
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 3.2e-102 376.3 465 45.4
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.2e-102 375.9 388 49.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 5.5e-102 375.6 392 46.9
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 5.5e-102 375.6 388 49.2
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 7.2e-102 375.2 471 43.5
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.6e-101 374.0 470 43.2
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.6e-101 374.0 479 42.4
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 3.6e-101 372.9 469 42.9
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 4.7e-101 372.5 473 42.7
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.0e-101 371.7 390 48.7
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.8e-100 370.5 475 42.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.3e-100 370.2 381 50.1
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.3e-100 370.2 481 42.2
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.6e-99 366.7 475 42.3
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 2.6e-99 366.7 395 49.6
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 5.7e-99 365.5 473 42.7
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 7.5e-99 365.2 472 41.7
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 7.5e-99 365.2 477 42.1
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 9.8e-99 364.8 475 42.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-98 364.4 472 41.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-98 364.0 384 47.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 2.2e-98 363.6 389 49.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.8e-98 363.2 476 43.7
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.7e-98 362.8 391 47.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 6.3e-98 362.1 384 47.1
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 6.3e-98 362.1 473 42.1
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 6.3e-98 362.1 477 41.5
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 8.3e-98 361.7 478 41.6
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.1e-97 361.3 393 46.6
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-97 360.1 475 43.2
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 2.4e-97 360.1 477 41.3
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.1e-97 359.8 473 42.7
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.6e-96 357.5 477 42.1
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-96 357.5 475 42.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 3.5e-96 356.3 473 43.1
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 3.5e-96 356.3 473 41.6
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.9e-96 355.5 387 45.5
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.0e-95 354.8 469 40.5
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.0e-95 354.8 280 58.2
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.3e-95 354.4 388 47.7
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.3e-95 353.6 396 46.2
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-95 353.2 476 42.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 6.6e-95 352.1 383 46.0
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 8.6e-95 351.7 387 45.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 8.6e-95 351.7 474 41.8
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.1e-94 351.3 477 41.9
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.1e-94 351.3 287 57.8
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.9e-94 350.5 383 46.5
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 4.2e-94 349.4 383 45.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.5e-94 349.0 394 47.2
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 5.5e-94 349.0 381 45.1
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.2e-94 348.6 476 40.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.5e-94 348.2 392 45.4
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-93 347.8 471 41.6
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.8e-93 346.7 512 39.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.1e-93 345.5 393 44.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.4e-92 344.4 395 46.3
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.8e-92 344.0 383 46.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.0e-92 343.2 388 46.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.2e-92 342.4 391 45.5
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 5.2e-92 342.4 479 41.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.8e-92 342.0 389 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.2e-91 341.3 521 40.3
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.5e-91 340.9 419 43.4
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.0e-91 340.5 388 45.9
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.4e-91 339.7 403 44.4
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.4e-91 339.7 472 39.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 4.4e-91 339.3 282 55.0
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 9.8e-91 338.2 387 45.2
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 6.3e-90 335.5 497 40.0
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.1e-89 334.7 381 45.1
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.1e-89 334.7 486 39.7
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.1e-89 334.7 473 40.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 5.4e-89 332.4 391 45.3
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.0e-88 330.5 387 45.5
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.0e-88 330.5 458 39.3
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.0e-88 330.5 437 41.4
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 3.5e-88 329.7 286 53.5
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 3.5e-88 329.7 333 48.6
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 5.9e-88 328.9 395 44.6
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 5.9e-88 328.9 488 38.7
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.8e-88 328.6 395 45.1
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.0e-87 328.2 288 53.5
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.3e-87 327.8 383 43.6
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.7e-87 327.4 394 44.4
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.3e-87 327.0 383 45.2
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.3e-87 327.0 383 45.2
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 2.3e-87 327.0 386 42.5
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 2.9e-87 326.6 383 44.9
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.9e-87 326.6 382 43.7
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 6.6e-87 325.5 381 43.6
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.9e-86 323.9 381 44.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.9e-86 323.9 413 41.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 4.3e-86 322.8 386 44.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 5.6e-86 322.4 384 44.8
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 7.3e-86 322.0 384 44.8
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.2e-85 321.2 383 42.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-85 320.9 382 43.7
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.1e-85 320.5 385 43.4
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-85 320.5 385 43.6
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.6e-85 319.7 392 42.6
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 6.1e-85 318.9 383 42.6
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 6.1e-85 318.9 457 38.5
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.1e-84 316.6 286 51.4
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 5.2e-84 315.8 394 41.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.0e-83 313.9 389 42.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 7.5e-83 312.0 290 49.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.3e-82 308.5 434 40.1
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.4e-81 307.8 290 50.7
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.4e-81 307.8 290 49.7
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.2e-80 304.7 412 41.0
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.3e-79 300.4 437 39.1
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 6.6e-79 298.9 351 43.6
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 5.6e-78 295.8 525 33.9
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 5.6e-78 295.8 464 39.2
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 9.5e-78 295.0 389 42.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.6e-75 287.0 475 37.7
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.4e-75 286.6 296 49.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.8e-75 285.8 475 37.9
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 3.7e-74 283.1 388 41.2
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.9e-74 282.7 483 35.6
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.1e-73 281.6 390 42.6
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.2e-72 278.1 461 36.7
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 6.6e-71 272.3 301 44.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 6.2e-69 265.8 311 42.8
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.6e-67 260.4 383 39.7
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.9e-65 254.2 351 42.7
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.1e-65 252.3 300 42.0
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.6e-64 251.1 312 41.3
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.4e-60 238.0 452 33.2
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 8.9e-60 235.3 437 33.9
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 3.8e-58 229.9 428 34.3
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 8.4e-58 228.8 399 37.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.7e-47 194.5 187 51.3
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.2e-45 186.0 186 48.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.7e-40 170.6 205 41.5
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.6e-32 143.3 289 34.3
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.4e-30 136.0 176 43.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-24 117.9 97 55.7
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 7.9e-24 115.9 127 44.1
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-23 115.2 92 56.5
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.3e-23 114.4 89 56.2
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 4.3e-22 110.2 87 58.6
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 4.3e-22 110.2 87 58.6
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-20 104.4 143 35.0
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-20 104.4 143 35.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.7e-13 80.5 211 28.9
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 6.1e-08 63.2 45 57.8


User provided reference genes

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