Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.4e-286 989.2 584 100.0
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 6.4e-135 485.3 455 59.6
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.1e-133 480.3 450 57.8
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.1e-133 480.3 450 57.8
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 2.7e-133 479.9 440 58.4
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.5e-133 479.6 396 66.4
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.3e-132 476.9 450 60.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 8.7e-132 474.9 389 65.3
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.9e-131 473.8 375 66.7
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 3.3e-131 473.0 440 57.3
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.3e-131 472.6 389 65.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 7.3e-131 471.9 386 64.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 6.2e-130 468.8 448 56.5
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.1e-129 468.0 389 63.8
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.1e-129 468.0 440 57.0
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.8e-129 467.2 451 57.2
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.9e-129 465.3 381 65.6
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.8e-128 462.2 386 63.2
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 7.6e-128 461.8 396 63.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.6e-128 461.8 381 63.0
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 7.6e-128 461.8 464 55.0
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 9.9e-128 461.5 389 63.0
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 9.9e-128 461.5 386 65.5
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.2e-127 460.3 370 64.1
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.8e-127 459.5 451 56.1
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 4.9e-127 459.1 452 56.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.4e-127 458.4 396 63.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.9e-126 457.2 467 57.4
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.4e-126 456.8 468 55.8
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.4e-126 456.8 389 60.9
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.2e-126 456.4 383 61.9
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.2e-126 456.4 464 55.0
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.4e-126 455.7 375 62.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.4e-126 455.7 389 64.0
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.1e-126 455.3 386 64.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 7.1e-126 455.3 389 62.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.1e-126 455.3 464 55.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 9.3e-126 454.9 383 61.6
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 9.3e-126 454.9 386 62.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.2e-125 454.5 452 56.2
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-125 454.1 389 64.0
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.1e-125 453.8 456 55.5
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.6e-125 452.6 389 63.8
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.0e-125 452.2 389 64.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 6.0e-125 452.2 403 61.3
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.0e-124 451.4 464 55.0
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 3.0e-124 449.9 386 64.0
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 3.9e-124 449.5 378 63.0
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 5.1e-124 449.1 379 62.0
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.1e-124 449.1 394 60.9
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-123 448.0 471 54.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.1e-123 448.0 378 63.0
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.5e-123 447.6 383 63.2
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.5e-123 447.6 379 62.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-123 447.2 348 67.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 4.3e-123 446.0 393 59.8
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 4.3e-123 446.0 378 62.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 7.3e-123 445.3 378 61.1
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.3e-122 444.5 378 62.4
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.1e-122 443.7 444 55.2
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.1e-122 443.7 381 61.4
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.1e-122 443.7 401 59.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.1e-121 441.4 456 53.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.1e-121 441.4 375 64.3
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.8e-121 440.7 386 61.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.4e-121 440.3 378 60.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-121 439.5 482 52.7
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 5.3e-121 439.1 387 61.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 6.9e-121 438.7 378 62.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.5e-120 437.6 394 58.9
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.6e-120 436.8 386 60.9
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.8e-120 435.6 398 59.5
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 5.8e-120 435.6 396 59.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.8e-120 435.6 394 60.7
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 7.6e-120 435.3 386 59.8
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 9.9e-120 434.9 466 52.8
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.9e-119 432.6 379 60.4
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-118 431.4 461 53.6
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.1e-118 431.4 387 61.0
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.4e-118 431.0 449 53.7
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 3.2e-118 429.9 386 59.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 4.6e-117 426.0 387 59.4
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 6.0e-117 425.6 386 58.8
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-117 425.6 446 51.6
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.0e-116 424.9 386 58.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 3.0e-116 423.3 386 59.8
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 3.0e-116 423.3 386 59.8
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.0e-116 423.3 467 51.4
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.1e-116 422.5 468 51.1
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 5.1e-116 422.5 368 61.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 5.1e-116 422.5 446 53.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.1e-115 421.4 478 48.7
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 5.6e-115 419.1 386 59.3
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 9.6e-115 418.3 446 52.9
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.6e-114 417.5 450 52.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 4.8e-114 416.0 394 60.9
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 6.2e-114 415.6 395 57.5
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.1e-113 414.8 470 52.8
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 4.0e-113 412.9 394 56.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 5.8e-112 409.1 436 53.2
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 9.3e-110 401.7 378 57.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 3.9e-108 396.4 386 53.9
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.5e-107 393.7 385 56.6
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.6e-106 391.0 445 51.7
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 4.2e-102 376.3 386 53.6
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.2e-101 374.8 328 62.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.5e-101 373.2 408 53.4
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.5e-99 367.1 394 55.8
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.6e-98 364.4 382 57.3
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 9.4e-94 348.6 324 61.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.6e-93 346.7 460 46.3
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 4.6e-93 346.3 491 45.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.2e-90 337.4 400 50.2
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.1e-89 332.0 386 49.7
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.2e-86 323.6 381 51.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.4e-83 313.2 387 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.5e-80 304.7 373 49.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.2e-78 296.6 405 46.2
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.2e-77 295.0 347 47.3
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.1e-77 294.3 212 69.3
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 7.5e-67 259.2 254 58.3
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.3e-66 255.8 225 62.2
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 4.1e-65 253.4 261 55.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.0e-63 246.5 442 41.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 4.7e-61 240.0 392 41.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.3e-60 237.7 221 57.0
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 5.4e-57 226.5 408 38.7
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 4.5e-56 223.4 279 48.4
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 4.5e-56 223.4 279 48.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 5.2e-52 209.9 320 41.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.4e-49 201.1 344 37.5
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.6e-48 196.8 277 47.7
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.8e-45 187.6 205 49.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.3e-38 164.1 167 54.5
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.1e-33 146.4 112 62.5
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-28 132.5 102 64.7
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.0e-27 128.3 97 69.1
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.6e-24 117.1 94 68.1
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-18 99.0 122 48.4
SEGI_40770 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 9.3e-17 92.8 50 98.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.0e-15 87.8 185 34.6
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-08 63.5 60 50.0
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-08 63.5 60 50.0
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 3.9e-07 60.8 97 39.2
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 6.6e-07 60.1 58 53.4
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-06 58.2 60 46.7
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 3.3e-06 57.8 70 42.9


User provided reference genes

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