Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 4.0e-75 284.6 139 100.0
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.9e-29 132.9 82 73.2
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 8.9e-27 124.0 83 68.7
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 8.9e-27 124.0 83 68.7
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 8.9e-27 124.0 83 68.7
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 9.9e-26 120.6 83 65.1
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.3e-25 120.2 83 65.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.9e-25 119.0 83 63.9
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 2.9e-25 119.0 83 65.1
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.9e-25 118.2 83 62.7
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.9e-25 118.2 83 62.7
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 6.4e-25 117.9 83 63.9
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 8.4e-25 117.5 83 63.9
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.1e-24 117.1 83 63.9
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.1e-24 117.1 82 64.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.4e-24 116.7 82 64.6
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.9e-24 116.3 83 62.7
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 2.4e-24 115.9 82 63.4
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 2.4e-24 115.9 82 63.4
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 3.2e-24 115.5 84 64.3
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 4.1e-24 115.2 83 62.7
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.1e-24 115.2 83 65.1
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 4.1e-24 115.2 83 65.1
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 7.1e-24 114.4 83 61.4
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 7.1e-24 114.4 83 65.1
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 9.2e-24 114.0 83 62.7
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.2e-23 113.6 83 63.9
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.6e-23 113.2 83 61.4
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.1e-23 112.8 82 62.2
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 2.1e-23 112.8 83 62.7
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.1e-23 112.8 82 62.2
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 3.5e-23 112.1 83 62.7
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 4.6e-23 111.7 82 59.8
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 6.0e-23 111.3 83 61.4
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 6.0e-23 111.3 84 63.1
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 1.3e-22 110.2 83 63.9
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 2.3e-22 109.4 84 60.7
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.3e-22 109.4 83 61.4
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 2.3e-22 109.4 85 61.2
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 3.0e-22 109.0 83 60.2
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 3.9e-22 108.6 83 59.0
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 3.9e-22 108.6 83 60.2
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 3.9e-22 108.6 83 62.7
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.9e-22 108.6 83 62.7
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 3.9e-22 108.6 82 57.3
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 5.1e-22 108.2 82 58.5
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 8.6e-22 107.5 83 60.2
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.1e-21 107.1 83 60.2
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 1.1e-21 107.1 84 59.5
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 1.5e-21 106.7 116 48.3
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.5e-21 106.7 83 59.0
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 1.5e-21 106.7 82 62.2
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 1.9e-21 106.3 84 58.3
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.9e-21 106.3 84 58.3
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.5e-21 105.9 83 61.4
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 4.3e-21 105.1 83 61.4
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 4.3e-21 105.1 82 61.0
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.6e-20 103.2 83 56.6
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.6e-20 103.2 83 56.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.1e-20 102.8 83 60.2
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 2.1e-20 102.8 83 59.0
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 2.1e-20 102.8 83 57.8
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.8e-20 102.4 85 60.0
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 3.6e-20 102.1 85 60.0
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 6.2e-20 101.3 85 60.0
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 6.2e-20 101.3 84 57.1
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 6.2e-20 101.3 87 56.3
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 8.1e-20 100.9 82 57.3
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 8.1e-20 100.9 82 56.1
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.1e-19 100.5 83 56.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.1e-19 100.5 85 57.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.1e-19 100.5 83 54.2
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 1.4e-19 100.1 83 53.0
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.8e-19 99.8 82 56.1
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.1e-19 99.0 84 58.3
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 5.2e-19 98.2 85 56.5
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 5.2e-19 98.2 85 55.3
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 5.2e-19 98.2 85 56.5
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 5.2e-19 98.2 85 56.5
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 5.2e-19 98.2 85 56.5
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 5.2e-19 98.2 83 51.8
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 6.8e-19 97.8 83 54.2
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 8.9e-19 97.4 83 51.8
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.5e-18 96.7 84 57.1
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.5e-18 96.7 92 51.1
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.5e-18 96.7 92 51.1
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.5e-18 96.7 81 54.3
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.6e-18 95.9 92 51.1
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.6e-18 95.9 92 53.3
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 2.6e-18 95.9 84 53.6
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.6e-18 95.9 83 57.8
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.6e-18 95.9 83 49.4
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.4e-18 95.5 92 51.1
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 3.4e-18 95.5 83 53.0
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.4e-18 95.1 92 52.2
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 5.8e-18 94.7 85 55.3
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 7.6e-18 94.4 85 54.1
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 7.6e-18 94.4 85 54.1
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 7.6e-18 94.4 82 54.9
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 9.9e-18 94.0 92 50.0
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 2.9e-17 92.4 83 49.4
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 2.9e-17 92.4 87 54.0
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 4.9e-17 91.7 83 54.2
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 8.4e-17 90.9 83 53.0
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 1.1e-16 90.5 90 48.9
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 1.1e-16 90.5 84 51.2
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 9.3e-16 87.4 85 51.8
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.2e-15 87.0 88 52.3
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 2.3e-14 82.8 87 49.4
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 5.3e-11 71.6 84 42.9
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 6.9e-11 71.2 89 43.8
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.2e-09 66.2 40 75.0
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.2e-07 60.5 54 48.1
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.6e-07 60.1 42 64.3


User provided reference genes

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