Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 1.5e-180 636.0 302 100.0
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.0e-115 418.3 299 65.6
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 1.2e-113 413.7 296 62.8
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 6.1e-113 411.4 302 63.2
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 6.1e-113 411.4 299 64.9
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 1.5e-111 406.8 298 63.1
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 2.0e-111 406.4 303 63.7
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 2.6e-111 406.0 299 62.5
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 2.6e-111 406.0 297 63.0
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 2.6e-111 406.0 297 63.0
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 2.6e-111 406.0 297 63.0
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.3e-110 403.7 298 63.8
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 1.3e-110 403.7 302 62.9
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 3.7e-110 402.1 295 63.1
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 4.8e-110 401.7 302 62.6
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 4.8e-110 401.7 296 63.9
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 8.2e-110 401.0 299 61.2
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 1.4e-109 400.2 300 62.0
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 1.8e-109 399.8 297 62.6
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 1.8e-109 399.8 300 64.3
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 1.8e-109 399.8 300 62.0
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 2.4e-109 399.4 304 62.8
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 2.4e-109 399.4 299 62.5
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 2.4e-109 399.4 298 63.1
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 5.3e-109 398.3 298 63.1
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 9.1e-109 397.5 300 62.7
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 9.1e-109 397.5 300 61.3
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 9.1e-109 397.5 300 62.3
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 1.2e-108 397.1 299 61.9
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 1.2e-108 397.1 300 61.7
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 1.2e-108 397.1 301 61.8
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.6e-108 396.0 300 61.0
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 3.5e-108 395.6 297 63.3
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 3.5e-108 395.6 302 60.3
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 7.7e-108 394.4 298 61.1
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 7.7e-108 394.4 297 63.3
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 1.0e-107 394.0 302 60.3
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 1.3e-107 393.7 297 63.3
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 1.3e-107 393.7 300 61.3
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 2.2e-107 392.9 297 63.3
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 2.2e-107 392.9 297 63.3
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 2.2e-107 392.9 297 62.0
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 2.2e-107 392.9 300 61.0
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.8e-107 392.1 302 60.9
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 6.5e-107 391.3 299 60.5
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 1.1e-106 390.6 299 60.9
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 1.5e-106 390.2 312 58.7
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 1.9e-106 389.8 300 60.3
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.9e-106 389.8 299 60.9
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 1.9e-106 389.8 303 59.1
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 2.5e-106 389.4 299 62.2
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 5.5e-106 388.3 298 62.1
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 5.5e-106 388.3 303 59.4
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 5.5e-106 388.3 303 59.4
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 7.2e-106 387.9 299 59.9
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 9.4e-106 387.5 297 61.6
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 1.2e-105 387.1 297 62.0
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 1.2e-105 387.1 299 60.2
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 1.2e-105 387.1 300 61.3
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.6e-105 386.7 287 62.7
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 3.6e-105 385.6 299 60.5
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 3.6e-105 385.6 299 60.9
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 4.7e-105 385.2 299 58.9
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 6.1e-105 384.8 295 60.7
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 8.0e-105 384.4 299 61.9
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 1.0e-104 384.0 298 60.1
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 1.4e-104 383.6 297 61.3
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 4.0e-104 382.1 298 61.1
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 5.2e-104 381.7 324 55.2
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 6.7e-104 381.3 300 62.3
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 6.7e-104 381.3 301 60.1
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.5e-103 380.2 295 61.0
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 3.3e-103 379.0 299 59.9
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 4.4e-103 378.6 307 59.6
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 9.7e-103 377.5 298 59.4
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.3e-102 377.1 299 59.9
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 2.8e-102 375.9 296 60.5
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 2.8e-102 375.9 295 59.7
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 2.8e-102 375.9 295 60.7
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 2.8e-102 375.9 295 59.3
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 3.7e-102 375.6 299 60.5
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.7e-102 375.6 295 60.7
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 8.2e-102 374.4 296 59.5
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 1.1e-101 374.0 298 59.4
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 1.1e-101 374.0 295 59.7
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 1.8e-101 373.2 299 57.9
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 3.1e-101 372.5 302 60.3
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 9.1e-101 370.9 299 59.2
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.2e-100 370.5 296 59.1
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.2e-100 370.5 299 56.9
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 1.2e-100 370.5 299 59.2
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 5.9e-100 368.2 301 58.8
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 1.0e-99 367.5 300 56.3
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 2.9e-99 365.9 296 59.8
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.9e-98 363.2 299 58.5
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 2.5e-98 362.8 299 56.9
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 3.2e-98 362.5 326 53.7
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 1.6e-97 360.1 298 57.0
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 6.1e-97 358.2 295 58.6
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 2.3e-96 356.3 300 58.7
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 7.5e-95 351.3 309 55.7
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 2.2e-94 349.7 309 56.0
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 2.2e-94 349.7 315 55.2
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 1.8e-93 346.7 287 60.6
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.8e-93 346.7 343 51.3
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 2.9e-91 339.3 301 53.2
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 3.8e-91 339.0 297 50.8
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 2.5e-90 336.3 299 55.2
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 7.2e-90 334.7 300 54.0
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 8.0e-89 331.3 299 56.2
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 2.4e-85 319.7 299 53.8
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 4.5e-84 315.5 243 61.3
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 4.5e-84 315.5 253 59.3
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.9e-84 315.1 299 52.2
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 2.3e-83 313.2 297 52.5
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 1.5e-82 310.5 258 56.6
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.8e-80 303.5 301 49.5
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 2.3e-80 303.1 298 51.0
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.7e-78 297.0 244 56.6
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 7.5e-71 271.6 299 49.2
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 6.0e-68 261.9 318 45.6
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.0e-67 261.2 228 57.9
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 3.0e-67 259.6 195 61.5
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.6e-65 252.7 208 56.2
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 8.3e-62 241.5 178 61.2
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 5.4e-61 238.8 180 62.2
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 7.8e-60 235.0 162 63.6
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 7.8e-60 235.0 180 61.1
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 3.4e-55 219.5 181 55.8
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 4.1e-53 212.6 160 60.6
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 7.1e-45 185.3 275 40.7
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 1.5e-42 177.6 131 62.6
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 3.1e-40 169.9 130 57.7
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 1.6e-36 157.5 131 58.0
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 9.6e-34 148.3 109 62.4
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 1.4e-32 144.4 125 57.6
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 4.0e-32 142.9 122 51.6
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 1.2e-28 131.3 165 44.2
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 5.1e-27 125.9 158 45.6
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 5.6e-26 122.5 81 65.4
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 2.0e-23 114.0 122 45.1
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 9.3e-21 105.1 112 50.9
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 9.3e-21 105.1 65 63.1
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 5.9e-15 85.9 65 56.9
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 5.0e-14 82.8 54 66.7
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 7.4e-10 68.9 93 41.9
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 9.0e-08 62.0 47 51.1


User provided reference genes

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