Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28077 Sequoiadendron giganteum HOM05D006462 ORTHO05D008067 2.4e-44 181.8 92 100.0
HanXRQChr04g0115281 Helianthus annuus HOM05D006462 ORTHO05D008067 1.1e-09 66.6 44 70.5
TAR627G0872 Trochodendron aralioides HOM05D006462 ORTHO05D008067 3.3e-09 65.1 54 55.6
ATR0763G016 Amborella trichopoda HOM05D006462 ORTHO05D008067 9.5e-09 63.5 63 54.0
MBI18_g37401_MAGBIO Magnolia biondii HOM05D006462 ORTHO05D008067 9.5e-09 63.5 43 62.8
Nitab4.5_0011847g0020 Nicotiana tabacum HOM05D006462 ORTHO05D008067 9.5e-09 63.5 44 63.6
DCAR_004313 Daucus carota HOM05D006462 ORTHO05D008067 1.2e-08 63.2 78 44.9
Dinv10269 Davidia involucrata HOM05D006462 ORTHO05D008067 1.2e-08 63.2 54 53.7
Nitab4.5_0005250g0020 Nicotiana tabacum HOM05D006462 ORTHO05D008067 1.2e-08 63.2 44 63.6
Aqoxy4G00016 Aquilegia oxysepala HOM05D006462 ORTHO05D008067 1.6e-08 62.8 44 59.1
Lsat_1_v5_gn_8_117040 Lactuca sativa HOM05D006462 ORTHO05D008067 1.6e-08 62.8 43 69.8
CiPaw.09G151400 Carya illinoinensis HOM05D006462 ORTHO05D008067 2.1e-08 62.4 43 62.8
Solyc02g069410.4 Solanum lycopersicum HOM05D006462 ORTHO05D008067 2.1e-08 62.4 44 61.4
Sopen02g018560 Solanum pennellii HOM05D006462 ORTHO05D008067 2.1e-08 62.4 44 61.4
PGSC0003DMG400021145 Solanum tuberosum HOM05D006462 ORTHO05D008067 2.1e-08 62.4 44 61.4
Zm00001eb032640 Zea mays HOM05D006462 ORTHO05D008067 2.1e-08 62.4 44 65.9
ECA232G4418 Erigeron canadensis HOM05D006462 ORTHO05D008067 2.8e-08 62.0 44 68.2
FAN25G3296 Fragaria x ananassa HOM05D006462 ORTHO05D008067 2.8e-08 62.0 55 50.9
Os12g0630700 Oryza sativa ssp. japonica HOM05D006462 ORTHO05D008067 2.8e-08 62.0 44 65.9
Peaxi162Scf00195g00131 Petunia axillaris HOM05D006462 ORTHO05D008067 2.8e-08 62.0 43 62.8
Rhsim13G0127700 Rhododendron simsii HOM05D006462 ORTHO05D008067 2.8e-08 62.0 54 55.6
CSS0006730 Camellia sinensis var. sinensis HOM05D006462 ORTHO05D008067 4.7e-08 61.2 54 55.6
FAN16G0781 Fragaria x ananassa HOM05D006462 ORTHO05D008067 4.7e-08 61.2 55 49.1
RcHm_v2.0_Chr5g0019331 Rosa chinensis HOM05D006462 ORTHO05D008067 4.7e-08 61.2 55 49.1
Sc16g0001760 Simmondsia chinensis HOM05D006462 ORTHO05D008067 4.7e-08 61.2 43 62.8
Cfa004797 Carpinus fangiana HOM05D006462 ORTHO05D008067 6.1e-08 60.8 43 62.8
Haze_10391 Corylus avellana HOM05D006462 ORTHO05D008067 6.1e-08 60.8 54 53.7
FvH4_3g11870 Fragaria vesca HOM05D006462 ORTHO05D008067 6.1e-08 60.8 55 49.1
FAN21G3298 Fragaria x ananassa HOM05D006462 ORTHO05D008067 6.1e-08 60.8 55 49.1
RcHm_v2.0_Chr5g0019301 Rosa chinensis HOM05D006462 ORTHO05D008067 6.1e-08 60.8 55 49.1
Lalb_Chr15g0088641 Lupinus albus HOM05D006462 ORTHO05D008067 8.0e-08 60.5 44 59.1
Sed0017395 Sechium edule HOM05D006462 ORTHO05D008067 8.0e-08 60.5 56 51.8
CANSAT35G0316 Cannabis sativa HOM05D006462 ORTHO05D008067 1.0e-07 60.1 54 53.7
ClCG01G025490 Citrullus lanatus HOM05D006462 ORTHO05D008067 1.0e-07 60.1 54 53.7
MELO3C007035.2 Cucumis melo HOM05D006462 ORTHO05D008067 1.0e-07 60.1 54 53.7
CsaV3_6G052750 Cucumis sativus L. HOM05D006462 ORTHO05D008067 1.0e-07 60.1 54 53.7
MD10G1238000 Malus domestica HOM05D006462 ORTHO05D008067 1.4e-07 59.7 44 54.5
arahy.Tifrunner.gnm1.ann1.2J20F7 Arachis hypogaea HOM05D006462 ORTHO05D008067 2.3e-07 58.9 55 49.1
arahy.Tifrunner.gnm1.ann1.CJL35W Arachis hypogaea HOM05D006462 ORTHO05D008067 2.3e-07 58.9 55 49.1
MSTRG.14813 Avicennia marina HOM05D006462 ORTHO05D008067 3.0e-07 58.5 51 54.9
CAN.G675.12 Capsicum annuum HOM05D006462 ORTHO05D008067 3.0e-07 58.5 44 59.1
Cpa.g.sc192.4 Carica papaya HOM05D006462 ORTHO05D008067 3.0e-07 58.5 43 60.5
Potri.015G112500 Populus trichocarpa HOM05D006462 ORTHO05D008067 3.0e-07 58.5 43 60.5
vmacro03491 Vaccinium macrocarpon HOM05D006462 ORTHO05D008067 3.0e-07 58.5 43 58.1
Atru.chr10.574 Acer truncatum HOM05D006462 ORTHO05D008067 4.0e-07 58.2 54 50.0
Hma1.2p1_0365F.1_g136810 Hydrangea macrophylla HOM05D006462 ORTHO05D008067 4.0e-07 58.2 55 50.9
Manes.16G054132 Manihot esculenta HOM05D006462 ORTHO05D008067 4.0e-07 58.2 60 48.3
Sp2g09990 Schrenkiella parvula HOM05D006462 ORTHO05D008067 4.0e-07 58.2 44 54.5
Hma1.2p1_0365F.1_g136800 Hydrangea macrophylla HOM05D006462 ORTHO05D008067 5.2e-07 57.8 54 51.9
Medtr2g029350 Medicago truncatula HOM05D006462 ORTHO05D008067 6.8e-07 57.4 44 59.1
PSO675G5440 Papaver somniferum HOM05D006462 ORTHO05D008067 6.8e-07 57.4 54 48.1
QL03p039440 Quercus lobata HOM05D006462 ORTHO05D008067 6.8e-07 57.4 43 58.1
GSVIVG01001717001 Vitis vinifera HOM05D006462 ORTHO05D008067 6.8e-07 57.4 54 48.1
AUR62034022 Chenopodium quinoa HOM05D006462 ORTHO05D008067 8.9e-07 57.0 44 52.3
AUR62043004 Chenopodium quinoa HOM05D006462 ORTHO05D008067 8.9e-07 57.0 44 52.3
Ciclev10015603m.g Citrus clementina HOM05D006462 ORTHO05D008067 8.9e-07 57.0 54 44.4
Eucgr.D01035 Eucalyptus grandis HOM05D006462 ORTHO05D008067 8.9e-07 57.0 54 50.0
SalBow7G1415 Salvia bowleyana HOM05D006462 ORTHO05D008067 8.9e-07 57.0 55 50.9
Ca_00797_v3 Cicer arietinum L. HOM05D006462 ORTHO05D008067 1.2e-06 56.6 44 56.8
MD10G1237600 Malus domestica HOM05D006462 ORTHO05D008067 1.2e-06 56.6 44 52.3
SGA_v2.0_scaffold51G18669 Striga asiatica HOM05D006462 ORTHO05D008067 1.2e-06 56.6 44 56.8
EL10Ac8g19520 Beta vulgaris HOM05D006462 ORTHO05D008067 1.5e-06 56.2 44 52.3
Migut.H01302 Erythranthe guttata HOM05D006462 ORTHO05D008067 1.5e-06 56.2 54 51.9
TPR.G26539 Trifolium pratense HOM05D006462 ORTHO05D008067 1.5e-06 56.2 44 56.8
TWI73G0634 Tripterygium wilfordii HOM05D006462 ORTHO05D008067 1.5e-06 56.2 43 55.8
Cc09_g06660 Coffea canephora HOM05D006462 ORTHO05D008067 2.0e-06 55.8 54 46.3
Nn7g38003 Nelumbo nucifera HOM05D006462 ORTHO05D008067 2.0e-06 55.8 43 55.8
Thecc.06G136400 Theobroma cacao HOM05D006462 ORTHO05D008067 2.0e-06 55.8 43 62.8
HPP92_012287 Vanilla planifolia HOM05D006462 ORTHO05D008067 2.0e-06 55.8 42 57.1
Lj6g0000446 Lotus japonicus HOM05D006462 ORTHO05D008067 2.6e-06 55.5 44 54.5
Psat1g169320 Pisum sativum HOM05D006462 ORTHO05D008067 2.6e-06 55.5 44 56.8
PGR083G2188 Punica granatum HOM05D006462 ORTHO05D008067 2.6e-06 55.5 55 45.5
AL8G14020 Arabidopsis lyrata HOM05D006462 ORTHO05D008067 3.4e-06 55.1 44 52.3
PSO675G4077 Papaver somniferum HOM05D006462 ORTHO05D008067 3.4e-06 55.1 54 46.3
Thhalv10000927m.g Eutrema salsugineum HOM05D006462 ORTHO05D008067 4.4e-06 54.7 55 41.8
Glyma.09G021500 Glycine max HOM05D006462 ORTHO05D008067 4.4e-06 54.7 44 54.5
Glyma.15G127800 Glycine max HOM05D006462 ORTHO05D008067 4.4e-06 54.7 44 54.5
Prupe.4G106200 Prunus persica HOM05D006462 ORTHO05D008067 4.4e-06 54.7 43 51.2
AT5G45170 Arabidopsis thaliana HOM05D006462 ORTHO05D008067 5.7e-06 54.3 44 52.3
COL.COLO4_30938 Corchorus olitorius HOM05D006462 ORTHO05D008067 5.7e-06 54.3 43 60.5
Gorai.011G050700 Gossypium raimondii HOM05D006462 ORTHO05D008067 5.7e-06 54.3 43 62.8
Phvul.006G130700 Phaseolus vulgaris HOM05D006462 ORTHO05D008067 5.7e-06 54.3 44 54.5
Sabra15G0134200 Salix brachista HOM05D006462 ORTHO05D008067 5.7e-06 54.3 43 53.5
BcaC06g31570 Brassica carinata HOM05D006462 ORTHO05D008067 7.5e-06 53.9 55 41.8
A06p46730 Brassica napus HOM05D006462 ORTHO05D008067 7.5e-06 53.9 55 41.8
BraA06t27545Z Brassica rapa HOM05D006462 ORTHO05D008067 7.5e-06 53.9 55 41.8
Carub.0008s0300 Capsella rubella HOM05D006462 ORTHO05D008067 7.5e-06 53.9 44 50.0
Duzib235G0723 Durio zibethinus HOM05D006462 ORTHO05D008067 7.5e-06 53.9 54 53.7
Gohir.A10G046300 Gossypium hirsutum HOM05D006462 ORTHO05D008067 7.5e-06 53.9 90 38.9
Gohir.D10G047600 Gossypium hirsutum HOM05D006462 ORTHO05D008067 7.5e-06 53.9 90 38.9


User provided reference genes

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