Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 0.0e+00 1656.0 1246 100.0
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.7e-55 222.6 261 46.0
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.9e-53 214.2 258 46.1
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.2e-51 208.0 249 43.8
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 3.6e-50 204.9 252 42.1
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.6e-50 204.9 249 42.6
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.8e-49 202.6 255 42.7
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.8e-49 202.6 252 41.7
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.8e-49 202.6 260 40.0
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.3e-49 202.2 270 39.6
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 3.0e-49 201.8 252 40.9
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.0e-49 201.8 254 41.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.9e-49 201.4 252 40.9
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.1e-49 201.1 264 39.4
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.1e-49 201.1 252 41.7
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.1e-49 201.1 252 41.7
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.1e-48 199.9 264 40.9
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.1e-48 199.9 254 40.6
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.1e-48 199.9 267 41.9
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.1e-48 199.9 271 42.4
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.5e-48 199.5 269 38.7
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.0e-48 199.1 271 39.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.6e-48 198.7 252 40.5
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 3.3e-48 198.4 252 42.1
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 3.3e-48 198.4 252 40.5
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.4e-48 198.0 252 41.3
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 5.7e-48 197.6 252 40.1
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.7e-48 197.6 238 42.4
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 7.4e-48 197.2 252 40.1
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 7.4e-48 197.2 252 41.7
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 9.7e-48 196.8 252 41.7
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-47 196.4 252 41.7
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-47 196.4 275 39.6
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.3e-47 196.4 252 41.3
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.3e-47 196.4 277 40.1
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.3e-47 196.4 271 37.6
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.3e-47 196.4 252 41.3
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.3e-47 196.4 275 38.9
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.2e-47 195.7 257 43.6
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.8e-47 195.3 252 38.9
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.8e-47 195.3 252 38.9
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.8e-47 195.3 252 38.9
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 2.8e-47 195.3 242 41.7
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 2.8e-47 195.3 264 39.0
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 3.7e-47 194.9 240 42.9
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 4.8e-47 194.5 252 38.9
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 4.8e-47 194.5 253 39.9
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 4.8e-47 194.5 253 39.9
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 4.8e-47 194.5 252 38.9
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 4.8e-47 194.5 258 40.3
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 6.3e-47 194.1 253 39.9
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 8.2e-47 193.7 252 41.7
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.1e-46 193.4 247 39.7
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 2.4e-46 192.2 253 39.5
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 2.4e-46 192.2 253 39.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.1e-46 191.8 241 40.7
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 4.1e-46 191.4 242 40.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 4.1e-46 191.4 250 40.0
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 4.1e-46 191.4 252 38.5
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.3e-46 191.0 266 37.2
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 7.0e-46 190.7 250 40.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 7.0e-46 190.7 284 36.6
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 7.0e-46 190.7 252 40.9
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 2.0e-45 189.1 270 38.1
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 2.6e-45 188.7 272 37.1
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 3.5e-45 188.3 250 40.0
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 3.5e-45 188.3 252 38.9
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.9e-45 187.6 262 39.3
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.0e-44 186.8 252 41.3
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.7e-44 186.0 247 39.3
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.2e-44 185.7 270 37.4
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.2e-44 185.7 248 41.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 2.9e-44 185.3 252 39.3
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.9e-44 185.3 247 40.1
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 8.5e-44 183.7 262 40.5
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 8.5e-44 183.7 263 37.3
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.1e-43 183.3 243 40.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.1e-43 183.3 248 41.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.1e-43 183.3 242 40.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.5e-43 183.0 271 38.4
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.5e-43 183.0 247 39.3
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.9e-43 182.6 247 40.5
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.9e-43 182.6 247 40.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.9e-43 182.6 231 39.8
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.9e-43 182.6 249 39.8
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.9e-43 182.6 255 36.9
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.9e-43 182.6 248 41.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.2e-43 181.8 281 38.1
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 7.2e-43 180.6 251 39.0
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 7.2e-43 180.6 271 36.2
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 9.4e-43 180.3 256 37.9
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 9.4e-43 180.3 265 36.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.2e-42 179.9 243 40.7
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.6e-42 179.5 270 39.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.6e-42 179.5 243 40.7
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.1e-42 179.1 250 40.4
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.1e-42 179.1 247 44.9
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 4.7e-42 177.9 240 39.2
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 6.1e-42 177.6 242 38.8
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 6.1e-42 177.6 251 37.5
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.1e-42 177.6 252 37.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.0e-41 176.8 248 41.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.8e-41 176.0 278 35.6
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 2.3e-41 175.6 241 39.4
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.3e-41 175.6 250 39.6
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.3e-41 175.6 240 39.6
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-41 175.3 252 36.9
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.0e-41 175.3 252 36.9
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.0e-41 174.9 239 43.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 5.2e-41 174.5 252 36.9
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 6.7e-41 174.1 238 39.1
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.0e-40 172.6 259 34.7
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.4e-40 171.4 254 34.6
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 5.7e-40 171.0 271 34.7
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.3e-39 169.9 237 38.8
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.3e-39 169.9 237 38.0
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.2e-39 169.1 251 38.2
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 8.2e-39 167.2 258 36.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.1e-38 166.8 215 41.9
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.8e-38 166.0 242 37.2
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 4.1e-38 164.9 225 36.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.0e-37 162.5 234 37.2
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.7e-37 162.2 250 36.4
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 7.7e-37 160.6 263 35.7
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 8.5e-36 157.1 239 38.1
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.5e-35 156.4 272 37.1
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 9.4e-35 153.7 219 37.4
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.2e-34 153.3 215 36.7
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 4.7e-34 151.4 254 33.9
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 6.8e-33 147.5 254 35.4
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 7.7e-21 107.5 213 34.3
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 3.3e-19 102.1 205 34.6
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 6.8e-17 94.4 160 37.5
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 3.4e-16 92.0 151 37.7
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.9e-12 78.6 112 40.2
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.6e-10 72.0 178 31.5
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 4.7e-10 71.6 161 34.8
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 8.0e-10 70.9 130 37.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 4.0e-09 68.6 79 39.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 4.4e-08 65.1 98 31.6
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-07 63.5 88 35.2
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 2.9e-07 62.4 150 28.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.1e-06 60.5 70 38.6


User provided reference genes

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