Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.1e-55 218.8 110 100.0
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.8e-12 75.1 62 46.8
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 4.9e-12 74.7 62 50.0
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 6.4e-12 74.3 113 39.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.1e-11 73.6 97 40.2
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.1e-11 73.6 97 40.2
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.1e-11 73.6 97 40.2
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.4e-11 73.2 74 45.9
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.4e-11 73.2 62 48.4
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.4e-11 73.2 71 45.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 3.2e-11 72.0 97 39.2
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 3.2e-11 72.0 97 39.2
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 3.2e-11 72.0 97 39.2
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.2e-11 72.0 97 39.2
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 4.2e-11 71.6 73 49.3
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 4.2e-11 71.6 71 49.3
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.4e-11 71.2 61 47.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.4e-11 71.2 65 50.8
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 5.4e-11 71.2 74 44.6
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 7.1e-11 70.9 70 44.3
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-11 70.9 106 36.8
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 9.3e-11 70.5 71 43.7
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.3e-11 70.5 106 36.8
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.3e-11 70.5 106 36.8
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 9.3e-11 70.5 106 38.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.2e-10 70.1 65 50.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.2e-10 70.1 79 44.3
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.2e-10 70.1 65 47.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.6e-10 69.7 80 43.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.6e-10 69.7 65 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.1e-10 69.3 79 40.5
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.1e-10 69.3 65 47.7
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.1e-10 69.3 71 43.7
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 2.7e-10 68.9 72 48.6
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.7e-10 68.9 72 45.8
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.7e-10 68.9 64 48.4
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 3.5e-10 68.6 74 45.9
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 6.0e-10 67.8 71 45.1
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 6.0e-10 67.8 80 40.0
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 7.8e-10 67.4 97 36.1
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.0e-09 67.0 62 45.2
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 1.0e-09 67.0 78 39.7
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.0e-09 67.0 80 41.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.3e-09 66.6 77 40.3
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 1.3e-09 66.6 77 41.6
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 2.3e-09 65.9 77 39.0
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.3e-09 65.9 74 41.9
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 2.3e-09 65.9 80 41.2
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 2.3e-09 65.9 71 46.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.3e-09 65.9 72 44.4
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.3e-09 65.9 75 45.3
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.0e-09 65.5 89 38.2
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 3.0e-09 65.5 71 43.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 3.0e-09 65.5 71 42.3
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.0e-09 65.5 73 43.8
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 3.9e-09 65.1 62 45.2
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.9e-09 65.1 64 45.3
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 6.6e-09 64.3 80 42.5
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 6.6e-09 64.3 80 42.5
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 8.7e-09 63.9 71 40.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.1e-08 63.5 70 45.7
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.5e-08 63.2 80 42.5
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.5e-08 63.2 74 40.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.5e-08 63.2 73 42.5
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 2.5e-08 62.4 65 46.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.3e-08 62.0 68 39.7
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 3.3e-08 62.0 68 39.7
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 4.3e-08 61.6 65 43.1
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 4.3e-08 61.6 68 38.2
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 4.3e-08 61.6 70 42.9
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 5.6e-08 61.2 74 41.9
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 7.3e-08 60.8 65 44.6
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 7.3e-08 60.8 74 43.2
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 7.3e-08 60.8 68 39.7
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 9.6e-08 60.5 65 44.6
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 9.6e-08 60.5 79 39.2
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 9.6e-08 60.5 69 42.0
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.3e-07 60.1 71 39.4
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.6e-07 59.7 68 38.2
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.1e-07 59.3 68 38.2
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 2.1e-07 59.3 65 43.1
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 2.8e-07 58.9 65 40.0
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.8e-07 58.9 100 37.0
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 6.2e-07 57.8 65 43.1
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 8.1e-07 57.4 62 45.2
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-06 57.0 53 47.2
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.4e-06 56.6 46 52.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.4e-06 55.8 62 40.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-06 55.8 66 40.9
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 2.4e-06 55.8 68 36.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.0e-06 55.1 64 42.2
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.0e-06 55.1 62 40.3
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.3e-06 54.7 50 46.0
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.3e-06 54.7 50 46.0
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.3e-06 54.7 50 46.0
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.3e-06 54.7 50 46.0
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.9e-06 54.3 81 33.3
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 6.9e-06 54.3 68 42.6
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 9.0e-06 53.9 62 38.7
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 9.0e-06 53.9 62 40.3
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 9.0e-06 53.9 85 35.3


User provided reference genes

Program Settings