Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_27493 Sequoiadendron giganteum HOM05D002646 ORTHO05D002782 4.1e-76 289.3 351 100.0
CDE05G0187 Ceratophyllum demersum HOM05D002646 ORTHO05D002782 2.9e-21 107.1 111 45.9
ATR0568G218 Amborella trichopoda HOM05D002646 ORTHO05D002782 4.9e-21 106.3 111 46.8
QL02p008978 Quercus lobata HOM05D002646 ORTHO05D002782 1.1e-20 105.1 111 45.9
PGR083G1089 Punica granatum HOM05D002646 ORTHO05D002782 5.4e-20 102.8 111 45.9
CANSAT25G1404 Cannabis sativa HOM05D002646 ORTHO05D002782 9.2e-20 102.1 111 46.8
SHI08146 Sapria himalayana HOM05D002646 ORTHO05D002782 2.7e-19 100.5 113 45.1
Atru.chr13.450 Acer truncatum HOM05D002646 ORTHO05D002782 5.9e-19 99.4 105 43.8
SEGI_28365 Sequoiadendron giganteum HOM05D002646 ORTHO05D002782 2.3e-18 97.4 89 53.9
CSS0007142 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 3.9e-18 96.7 112 42.9
MELO3C010957.2 Cucumis melo HOM05D002646 ORTHO05D002782 1.1e-17 95.1 109 45.0
Sabra05G0176100 Salix brachista HOM05D002646 ORTHO05D002782 1.1e-17 95.1 102 44.1
Oeu063762.1 Olea europaea HOM05D002646 ORTHO05D002782 1.5e-17 94.7 111 44.1
DCAR_006185 Daucus carota HOM05D002646 ORTHO05D002782 7.3e-17 92.4 111 40.5
Ah.10g033130 Amaranthus hybridus HOM05D002646 ORTHO05D002782 1.2e-16 91.7 110 41.8
Oeu007022.1 Olea europaea HOM05D002646 ORTHO05D002782 1.2e-16 91.7 111 42.3
MD11G1162400 Malus domestica HOM05D002646 ORTHO05D002782 1.6e-16 91.3 109 43.1
DCAR_019536 Daucus carota HOM05D002646 ORTHO05D002782 3.6e-16 90.1 111 37.8
MBI16_g07737_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 6.2e-16 89.4 84 52.4
TPR.G20158 Trifolium pratense HOM05D002646 ORTHO05D002782 8.0e-16 89.0 102 42.2
Glyma.14G073700 Glycine max HOM05D002646 ORTHO05D002782 1.4e-15 88.2 102 43.1
Glyma.17G251300 Glycine max HOM05D002646 ORTHO05D002782 1.4e-15 88.2 102 44.1
PSO675G2317 Papaver somniferum HOM05D002646 ORTHO05D002782 1.4e-15 88.2 111 40.5
Lj5g0008895 Lotus japonicus HOM05D002646 ORTHO05D002782 2.3e-15 87.4 105 41.0
PSO017G2345 Papaver somniferum HOM05D002646 ORTHO05D002782 2.3e-15 87.4 111 40.5
MBI17_g36957_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 3.1e-15 87.0 84 51.2
Thhalv10006936m.g Eutrema salsugineum HOM05D002646 ORTHO05D002782 6.8e-15 85.9 112 36.6
HanXRQChr03g0069631 Helianthus annuus HOM05D002646 ORTHO05D002782 6.8e-15 85.9 111 40.5
Aa31LG7G4170 Aethionema arabicum HOM05D002646 ORTHO05D002782 8.9e-15 85.5 112 35.7
BcaC05g25840 Brassica carinata HOM05D002646 ORTHO05D002782 1.2e-14 85.1 112 34.8
BolC5t30509H Brassica oleracea HOM05D002646 ORTHO05D002782 1.2e-14 85.1 112 34.8
Phvul.001G013700 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 1.2e-14 85.1 102 42.2
BcaB07g31981 Brassica carinata HOM05D002646 ORTHO05D002782 1.5e-14 84.7 112 34.8
A06p15700 Brassica napus HOM05D002646 ORTHO05D002782 2.0e-14 84.3 112 34.8
C05p18020 Brassica napus HOM05D002646 ORTHO05D002782 2.0e-14 84.3 112 34.8
BraA06t24679Z Brassica rapa HOM05D002646 ORTHO05D002782 2.0e-14 84.3 112 34.8
Aqoxy2G03652 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 2.6e-14 84.0 109 40.4
Carub.0001s1909 Capsella rubella HOM05D002646 ORTHO05D002782 2.6e-14 84.0 112 34.8
AUR62025546 Chenopodium quinoa HOM05D002646 ORTHO05D002782 3.4e-14 83.6 95 42.1
Lalb_Chr14g0369361 Lupinus albus HOM05D002646 ORTHO05D002782 3.4e-14 83.6 104 42.3
Sp1g17390 Schrenkiella parvula HOM05D002646 ORTHO05D002782 3.4e-14 83.6 112 34.8
Zm00001eb246850 Zea mays HOM05D002646 ORTHO05D002782 3.4e-14 83.6 111 37.8
VMungo0647G1092 Vigna mungo HOM05D002646 ORTHO05D002782 1.3e-13 81.6 102 41.2
Os02g0611400 Oryza sativa ssp. japonica HOM05D002646 ORTHO05D002782 1.7e-13 81.3 108 37.0
Lsat_1_v5_gn_5_28001 Lactuca sativa HOM05D002646 ORTHO05D002782 2.2e-13 80.9 111 40.5
THA.LOC104813824 Tarenaya hassleriana HOM05D002646 ORTHO05D002782 6.4e-13 79.3 110 35.5
AL1G32270 Arabidopsis lyrata HOM05D002646 ORTHO05D002782 1.1e-12 78.6 110 32.7
AT1G19520 Arabidopsis thaliana HOM05D002646 ORTHO05D002782 1.1e-12 78.6 110 32.7
CARHR020090 Cardamine hirsuta HOM05D002646 ORTHO05D002782 1.1e-12 78.6 110 32.7
unitig_46.g18436 Utricularia gibba HOM05D002509 ORTHO05D002758 1.9e-12 77.8 103 35.9
HPP92_021824 Vanilla planifolia HOM05D002646 ORTHO05D002782 7.0e-12 75.9 81 45.7
Manes.05G158200 Manihot esculenta HOM05D002646 ORTHO05D002782 1.2e-11 75.1 76 43.4
Hund06823 Selenicereus undatus HOM05D002646 ORTHO05D002782 3.5e-11 73.6 74 43.2
Actinidia15339 Actinidia chinensis HOM05D002646 ORTHO05D002782 6.0e-11 72.8 73 45.2
Cc10_g02720 Coffea canephora HOM05D002646 ORTHO05D002782 2.3e-10 70.9 85 41.2
CsaV3_2G028870 Cucumis sativus L. HOM05D002646 ORTHO05D002782 2.3e-10 70.9 68 47.1
Ca_13365_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 5.0e-10 69.7 83 41.0
CSS0029682 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.9e-09 67.8 49 59.2
CSS0036552 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.9e-09 67.8 49 59.2
EL10Ac4g08951 Beta vulgaris HOM05D002646 ORTHO05D002782 4.3e-09 66.6 82 37.8
MBI04_g32239_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 4.3e-09 66.6 49 61.2
TAR374G0079 Trochodendron aralioides HOM05D002646 ORTHO05D002782 5.6e-09 66.2 49 59.2
Sed0008809 Sechium edule HOM05D002646 ORTHO05D002782 7.3e-09 65.9 75 41.3
Cfa018170 Carpinus fangiana HOM05D002646 ORTHO05D002782 9.5e-09 65.5 67 38.8
arahy.Tifrunner.gnm1.ann1.HKT7FP Arachis hypogaea HOM05D002646 ORTHO05D002782 1.2e-08 65.1 49 59.2
PGSC0003DMG400014782 Solanum tuberosum HOM05D002646 ORTHO05D002782 1.2e-08 65.1 64 48.4
TWI23G1057 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 1.2e-08 65.1 49 59.2
Cpa.g.sc18.120 Carica papaya HOM05D002646 ORTHO05D002782 1.6e-08 64.7 49 57.1
Duzib268G0058 Durio zibethinus HOM05D002646 ORTHO05D002782 1.6e-08 64.7 49 59.2
Duzib268G0077 Durio zibethinus HOM05D002646 ORTHO05D002782 1.6e-08 64.7 49 59.2
ECA236G2773 Erigeron canadensis HOM05D002646 ORTHO05D002782 1.6e-08 64.7 49 61.2
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.6e-08 64.7 49 61.2
Peaxi162Scf00258g00024 Petunia axillaris HOM05D002646 ORTHO05D002782 1.6e-08 64.7 74 40.5
GSVIVG01027622001 Vitis vinifera HOM05D002646 ORTHO05D002782 1.6e-08 64.7 49 59.2
FAN09G1605 Fragaria x ananassa HOM05D002646 ORTHO05D002782 2.1e-08 64.3 82 37.8
Medtr7g075010 Medicago truncatula HOM05D002646 ORTHO05D002782 2.8e-08 63.9 49 59.2
PSO782G0929 Papaver somniferum HOM05D002646 ORTHO05D002782 2.8e-08 63.9 49 59.2
Migut.C00748 Erythranthe guttata HOM05D002646 ORTHO05D002782 3.6e-08 63.5 82 32.9
Rhsim06G0032100 Rhododendron simsii HOM05D002646 ORTHO05D002782 3.6e-08 63.5 76 40.8
AUR62030050 Chenopodium quinoa HOM05D002646 ORTHO05D002782 4.7e-08 63.2 49 59.2
HanXRQChr04g0122351 Helianthus annuus HOM05D002646 ORTHO05D002782 4.7e-08 63.2 49 59.2
Lj9A571T76 Lonicera japonica HOM05D002646 ORTHO05D002782 4.7e-08 63.2 49 57.1
CSS0011651 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 6.2e-08 62.8 76 38.2
CSS0033317 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 6.2e-08 62.8 76 38.2
CSS0043279 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 6.2e-08 62.8 76 38.2
Ca_07824_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 59.2
Eucgr.F01577 Eucalyptus grandis HOM05D002646 ORTHO05D002782 6.2e-08 62.8 62 43.5
FvH4_7g12010 Fragaria vesca HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 53.1
FAN01G3025 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 53.1
FAN03G1830 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 53.1
FAN06G0179 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 53.1
FAN06G4772 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 53.1
FAN10G4284 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 53.1
Oeu003485.1 Olea europaea HOM05D002646 ORTHO05D002782 6.2e-08 62.8 49 55.1
TAR626G1719 Trochodendron aralioides HOM05D002646 ORTHO05D002782 6.2e-08 62.8 70 47.1
arahy.Tifrunner.gnm1.ann1.7IJL1I Arachis hypogaea HOM05D002646 ORTHO05D002782 8.1e-08 62.4 49 57.1
CiPaw.01G261200 Carya illinoinensis HOM05D002646 ORTHO05D002782 8.1e-08 62.4 49 55.1
Haze_17945 Corylus avellana HOM05D002646 ORTHO05D002782 8.1e-08 62.4 49 61.2
PSO478G1528 Papaver somniferum HOM05D002646 ORTHO05D002782 8.1e-08 62.4 49 59.2
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 8.1e-08 62.4 73 39.7
Thecc.01G375100 Theobroma cacao HOM05D002646 ORTHO05D002782 8.1e-08 62.4 49 57.1
ATR0697G028 Amborella trichopoda HOM05D002646 ORTHO05D002782 1.1e-07 62.0 49 59.2
AUR62043098 Chenopodium quinoa HOM05D002646 ORTHO05D002782 1.1e-07 62.0 70 40.0
COL.COLO4_12558 Corchorus olitorius HOM05D002646 ORTHO05D002782 1.1e-07 62.0 49 53.1
MELO3C006182.2 Cucumis melo HOM05D002646 ORTHO05D002782 1.1e-07 62.0 53 52.8
Nitab4.5_0004768g0020 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.1e-07 62.0 71 39.4
AUR62002634 Chenopodium quinoa HOM05D002646 ORTHO05D002782 1.4e-07 61.6 49 59.2
FAN02G0761 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.4e-07 61.6 76 36.8
TPR.G26954 Trifolium pratense HOM05D002646 ORTHO05D002782 1.4e-07 61.6 49 57.1
arahy.Tifrunner.gnm1.ann1.GFJ2Z4 Arachis hypogaea HOM05D002646 ORTHO05D002782 1.8e-07 61.2 72 43.1
arahy.Tifrunner.gnm1.ann1.RWN5MT Arachis hypogaea HOM05D002646 ORTHO05D002782 1.8e-07 61.2 72 43.1
FAN10G1248 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.8e-07 61.2 49 51.0
Nitab4.5_0000017g0180 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.8e-07 61.2 71 39.4
Nitab4.5_0000457g0400 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.8e-07 61.2 49 55.1
Peaxi162Scf00021g01520 Petunia axillaris HOM05D002646 ORTHO05D002782 1.8e-07 61.2 49 55.1
Ciclev10020287m.g Citrus clementina HOM05D002646 ORTHO05D002782 2.3e-07 60.8 49 55.1
FAN05G0303 Fragaria x ananassa HOM05D002646 ORTHO05D002782 2.3e-07 60.8 71 38.0
FAN14G1091 Fragaria x ananassa HOM05D002646 ORTHO05D002782 2.3e-07 60.8 71 38.0
Gohir.A08G133800 Gossypium hirsutum HOM05D002646 ORTHO05D002782 2.3e-07 60.8 49 57.1
Gohir.D06G005550 Gossypium hirsutum HOM05D002646 ORTHO05D002782 2.3e-07 60.8 50 60.0
Gohir.D08G155000 Gossypium hirsutum HOM05D002646 ORTHO05D002782 2.3e-07 60.8 49 57.1
Gorai.004G161000 Gossypium raimondii HOM05D002646 ORTHO05D002782 2.3e-07 60.8 49 57.1
Hund22797 Selenicereus undatus HOM05D002646 ORTHO05D002782 2.3e-07 60.8 49 59.2
HPP92_001656 Vanilla planifolia HOM05D002646 ORTHO05D002782 2.3e-07 60.8 49 57.1
CsaV3_3G009620 Cucumis sativus L. HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 55.1
Duzib268G1615 Durio zibethinus HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 57.1
ECA246G2606 Erigeron canadensis HOM05D002646 ORTHO05D002782 3.1e-07 60.5 74 40.5
Gohir.A06G009600 Gossypium hirsutum HOM05D002646 ORTHO05D002782 3.1e-07 60.5 50 58.0
Gorai.010G009700 Gossypium raimondii HOM05D002646 ORTHO05D002782 3.1e-07 60.5 50 58.0
Manes.01G265200 Manihot esculenta HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 57.1
Nn7g35815 Nelumbo nucifera HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 59.2
Psat3g115520 Pisum sativum HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 57.1
Rhsim08G0118000 Rhododendron simsii HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 55.1
RhsimUnG0099800 Rhododendron simsii HOM05D002646 ORTHO05D002782 3.1e-07 60.5 49 55.1
Ciclev10000434m.g Citrus clementina HOM05D002646 ORTHO05D002782 4.0e-07 60.1 49 59.2
Duzib041G0261 Durio zibethinus HOM05D002646 ORTHO05D002782 4.0e-07 60.1 49 61.2
Eucgr.G00320 Eucalyptus grandis HOM05D002646 ORTHO05D002782 4.0e-07 60.1 49 53.1
Lsat_1_v5_gn_7_7441 Lactuca sativa HOM05D002646 ORTHO05D002782 4.0e-07 60.1 49 57.1
Aqoxy7G00603 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 57.1
MSTRG.13432 Avicennia marina HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 53.1
Dinv29528 Davidia involucrata HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 53.1
Lalb_Chr03g0039441 Lupinus albus HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 55.1
MD08G1028000 Malus domestica HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 57.1
Nn4g26422 Nelumbo nucifera HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 51.0
RcHm_v2.0_Chr1g0350721 Rosa chinensis HOM05D002646 ORTHO05D002782 5.2e-07 59.7 49 53.1
vmacro21650 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 5.2e-07 59.7 74 39.2
Dinv36096 Davidia involucrata HOM05D002646 ORTHO05D002782 6.8e-07 59.3 49 57.1
FvH4_6g24430 Fragaria vesca HOM05D002646 ORTHO05D002782 6.8e-07 59.3 50 58.0
MBI17_g19091_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 6.8e-07 59.3 96 36.5
QL12p017558 Quercus lobata HOM05D002646 ORTHO05D002782 6.8e-07 59.3 49 51.0
Sc19g0004610 Simmondsia chinensis HOM05D002646 ORTHO05D002782 6.8e-07 59.3 49 53.1
EL10Ac2g03761 Beta vulgaris HOM05D002646 ORTHO05D002782 1.2e-06 58.5 49 55.1
CANSAT11G0871 Cannabis sativa HOM05D002646 ORTHO05D002782 1.5e-06 58.2 49 51.0
MD03G1139500 Malus domestica HOM05D002646 ORTHO05D002782 1.5e-06 58.2 49 55.1
Potri.005G228200 Populus trichocarpa HOM05D002646 ORTHO05D002782 1.5e-06 58.2 50 54.0
Prupe.2G146700 Prunus persica HOM05D002646 ORTHO05D002782 1.5e-06 58.2 49 53.1
Ah.13g074290 Amaranthus hybridus HOM05D002646 ORTHO05D002782 2.0e-06 57.8 49 55.1
ClCG08G014890 Citrullus lanatus HOM05D002646 ORTHO05D002782 2.0e-06 57.8 49 57.1
Lj4A37G90 Lonicera japonica HOM05D002646 ORTHO05D002782 2.0e-06 57.8 49 59.2
CiPaw.16G059900 Carya illinoinensis HOM05D002646 ORTHO05D002782 2.6e-06 57.4 49 55.1
ClCG05G002180 Citrullus lanatus HOM05D002646 ORTHO05D002782 2.6e-06 57.4 49 55.1
Nn4g23787 Nelumbo nucifera HOM05D002646 ORTHO05D002782 2.6e-06 57.4 47 55.3
Actinidia12264 Actinidia chinensis HOM05D002646 ORTHO05D002782 3.4e-06 57.0 45 57.8
CSS0004118 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 3.4e-06 57.0 53 50.9
Migut.E00070 Erythranthe guttata HOM05D002646 ORTHO05D002782 3.4e-06 57.0 49 51.0
Phvul.008G076800 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 3.4e-06 57.0 49 55.1
SGA_v2.0_scaffold201G41411 Striga asiatica HOM05D002646 ORTHO05D002782 3.4e-06 57.0 49 57.1
Actinidia31415 Actinidia chinensis HOM05D002646 ORTHO05D002782 4.4e-06 56.6 49 55.1
Haze_16825 Corylus avellana HOM05D002646 ORTHO05D002782 4.4e-06 56.6 49 46.9
Glyma.18G221100 Glycine max HOM05D002646 ORTHO05D002782 4.4e-06 56.6 49 55.1
Thecc.08G028900 Theobroma cacao HOM05D002646 ORTHO05D002782 4.4e-06 56.6 47 57.4
Atru.chr5.320 Acer truncatum HOM05D002646 ORTHO05D002782 5.8e-06 56.2 49 51.0
Cpa.g.sc33.173 Carica papaya HOM05D002646 ORTHO05D002782 5.8e-06 56.2 49 53.1
TWI36G1083 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 5.8e-06 56.2 49 55.1
vmacro13392 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 5.8e-06 56.2 49 51.0
Lj1g0023852 Lotus japonicus HOM05D002646 ORTHO05D002782 7.5e-06 55.8 49 55.1
Aa31LG1G11300 Aethionema arabicum HOM05D002646 ORTHO05D002782 9.8e-06 55.5 49 53.1
Nitab4.5_0002993g0040 Nicotiana tabacum HOM05D002646 ORTHO05D002782 9.8e-06 55.5 49 49.0
Sc02g0005990 Simmondsia chinensis HOM05D002646 ORTHO05D002782 9.8e-06 55.5 45 60.0


User provided reference genes

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