Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 0.0e+00 2284.2 1254 100.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.2e-291 1005.0 511 100.0
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 8.2e-188 662.1 1028 44.8
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.8e-179 634.4 1232 40.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.8e-163 581.3 1057 40.9
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.4e-158 565.1 1233 38.8
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.2e-157 562.0 1060 40.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.5e-157 561.6 1093 39.0
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.0e-157 561.2 1097 37.8
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.6e-157 560.8 1244 37.6
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 5.7e-157 559.7 1212 38.4
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 5.7e-157 559.7 1066 40.1
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 7.5e-157 559.3 1218 37.8
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.3e-156 558.5 1230 37.6
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.7e-156 558.1 1211 38.0
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.8e-155 554.7 1151 37.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 7.0e-155 552.7 1230 38.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.2e-154 552.0 905 43.5
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 8.6e-153 545.8 1104 38.6
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 3.3e-152 543.9 1024 39.4
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 1.2e-151 542.0 1031 38.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 6.1e-151 539.7 1235 36.0
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.3e-150 537.7 1198 37.4
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.7e-148 530.4 1053 37.8
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 4.6e-146 523.5 1104 36.4
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 7.8e-146 522.7 959 39.6
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.9e-145 520.4 1249 35.6
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 5.0e-145 520.0 1254 36.0
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.1e-144 518.8 1111 38.3
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.5e-144 518.5 1105 36.5
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.9e-144 518.1 1037 39.0
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.3e-144 516.9 1129 37.6
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 9.5e-144 515.8 1217 36.0
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 4.7e-143 513.5 1042 37.6
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 6.2e-143 513.1 1125 37.3
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.4e-142 511.9 990 41.3
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.4e-142 511.9 1217 35.9
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.8e-142 511.5 1218 36.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.8e-142 511.5 1235 36.6
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.5e-141 508.4 1119 37.8
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.6e-141 507.7 1157 35.7
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 7.5e-141 506.1 1204 36.2
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 9.8e-141 505.8 994 39.1
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 5.4e-139 500.0 1189 35.4
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 9.2e-139 499.2 1246 36.8
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.2e-138 498.8 1229 36.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.6e-138 498.4 1216 35.9
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.1e-138 498.0 1189 36.5
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 6.0e-138 496.5 1134 36.9
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.3e-137 495.4 1063 36.5
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 3.0e-137 494.2 965 39.7
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.1e-136 492.3 1179 35.5
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.1e-136 492.3 1143 36.0
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 9.5e-136 489.2 973 38.8
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.6e-135 488.4 1212 35.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.8e-135 487.6 1204 36.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.1e-134 485.7 1053 37.3
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.1e-134 485.7 1030 36.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 6.8e-134 483.0 1117 34.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 6.8e-134 483.0 1143 35.7
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.2e-133 482.3 988 40.1
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.2e-133 482.3 1163 35.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.2e-133 482.3 1053 37.9
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.4e-133 480.7 1080 35.7
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.3e-132 478.8 1191 33.5
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.7e-132 478.4 1152 35.9
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.1e-130 471.5 984 39.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.3e-129 468.8 853 40.9
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.3e-128 464.2 1058 36.5
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 7.3e-128 463.0 950 39.3
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.8e-126 458.4 1056 36.6
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 5.2e-126 456.8 1010 37.0
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 7.1e-123 446.4 856 39.4
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.2e-122 445.7 934 38.2
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 6.2e-119 433.3 817 40.8
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.8e-118 431.8 1177 33.3
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.3e-118 430.3 1194 34.6
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 6.9e-118 429.9 994 37.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.3e-116 425.6 885 35.9
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 3.8e-116 424.1 1175 33.8
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.8e-116 424.1 1104 33.9
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.4e-115 422.2 1193 32.4
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.3e-115 419.5 1225 34.2
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 2.7e-114 417.9 1163 33.9
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 7.8e-114 416.4 1179 33.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.3e-111 409.1 860 39.8
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.8e-111 407.9 1154 33.9
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 5.3e-110 403.7 1079 34.0
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 2.6e-109 401.4 827 39.9
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.3e-108 399.1 540 49.1
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-106 392.5 630 43.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.1e-106 391.7 825 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.5e-104 385.6 724 39.8
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.3e-103 382.5 832 38.8
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.3e-103 382.5 1156 31.6
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 6.2e-103 380.2 1163 33.1
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.9e-100 371.3 825 39.2
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 6.5e-100 370.2 1001 34.2
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 3.2e-99 367.9 957 35.9
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.3e-96 357.8 1077 33.5
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 3.4e-93 347.8 949 33.8
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.0e-92 346.3 949 33.8
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 9.3e-91 339.7 658 39.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.5e-90 337.8 976 32.8
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.5e-90 337.8 976 32.8
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 1.2e-82 312.8 686 38.2
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-81 308.9 564 39.5
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.5e-80 305.8 498 42.8
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.0e-76 293.1 482 41.9
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.7e-71 274.6 1076 30.3
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 5.5e-67 260.8 503 37.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-64 253.1 525 39.2
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.4e-62 245.4 322 43.5
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.9e-52 211.8 555 34.4
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.2e-48 199.9 1021 27.3
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.0e-48 199.1 413 39.0
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 4.4e-48 198.0 297 39.1
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.2e-39 169.1 532 30.3
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.0e-37 162.5 392 32.4
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.0e-37 162.5 94 85.1
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 4.6e-37 161.4 538 29.4
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 6.6e-36 157.5 516 28.9
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 4.7e-34 151.4 153 49.7
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.0e-28 133.7 79 87.3
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.1e-27 130.2 496 28.2
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 8.1e-26 124.0 266 35.3
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 4.4e-24 118.2 257 33.5
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.7e-23 115.2 257 35.0
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.5e-16 93.2 254 31.1
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.6e-16 90.9 126 59.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-15 90.1 122 39.3
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 2.9e-15 89.0 152 48.7
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 4.1e-14 85.1 633 24.5
SEGI_25662 Sequoiadendron giganteum HOM05D000285 ORTHO05D011087 1.2e-13 83.6 88 55.7
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.7e-12 79.7 372 26.9
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.9e-12 78.6 310 27.4
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.1e-10 72.8 393 26.7
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-09 69.7 107 60.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.2e-09 68.2 172 32.6


User provided reference genes

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