Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.8e-216 754.2 377 100.0
SEGI_35730 Sequoiadendron giganteum HOM05D012154 ORTHO05D050946 4.6e-25 119.8 80 72.5
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.1e-18 96.7 65 73.8
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 3.8e-11 73.6 60 55.0
SEGI_27205 Sequoiadendron giganteum HOM05D000873 ORTHO05D019276 4.9e-11 73.2 84 50.0
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 8.4e-11 72.4 60 56.7
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.4e-10 71.6 60 55.0
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.4e-10 71.6 60 53.3
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.4e-10 70.9 60 55.0
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 3.2e-10 70.5 60 56.7
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.1e-10 69.3 48 68.8
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 9.2e-10 68.9 60 55.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 9.2e-10 68.9 65 46.2
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.2e-09 68.6 60 56.7
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 55.0
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 55.0
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 55.0
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 56.7
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 56.7
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 58.3
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 58.3
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.1e-09 67.8 60 53.3
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.7e-09 67.4 60 53.3
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 2.7e-09 67.4 60 56.7
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 2.7e-09 67.4 60 56.7
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.7e-09 67.4 60 56.7
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.5e-09 67.0 60 55.0
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 3.5e-09 67.0 60 51.7
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 3.5e-09 67.0 60 51.7
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.5e-09 67.0 60 51.7
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 4.6e-09 66.6 48 66.7
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 4.6e-09 66.6 60 55.0
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 4.6e-09 66.6 60 56.7
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 4.6e-09 66.6 60 55.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 6.0e-09 66.2 60 55.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 6.0e-09 66.2 60 55.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 6.0e-09 66.2 60 55.0
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 50.0
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 50.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 50.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 50.0
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 50.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 55.0
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 55.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 55.0
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 55.0
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 55.0
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 50.0
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 56.7
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 7.8e-09 65.9 60 53.3
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 50.0
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.0e-08 65.5 60 55.0
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.0e-08 65.5 47 66.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.3e-08 65.1 60 46.7
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.3e-08 65.1 60 55.0
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.3e-08 65.1 48 60.4
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.7e-08 64.7 60 53.3
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.7e-08 64.7 60 53.3
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.7e-08 64.7 58 55.2
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.7e-08 64.7 55 54.5
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.7e-08 64.7 60 50.0
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.7e-08 64.7 60 53.3
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.3e-08 64.3 48 58.3
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.3e-08 64.3 60 51.7
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 3.0e-08 63.9 60 53.3
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 3.0e-08 63.9 60 53.3
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 3.0e-08 63.9 60 51.7
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 3.9e-08 63.5 60 51.7
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.9e-08 63.5 60 46.7
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 3.9e-08 63.5 50 64.0
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 5.1e-08 63.2 60 51.7
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 5.1e-08 63.2 60 51.7
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 5.1e-08 63.2 60 51.7
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 5.1e-08 63.2 58 53.4
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 5.1e-08 63.2 60 51.7
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 6.6e-08 62.8 48 58.3
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 8.6e-08 62.4 60 51.7
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 8.6e-08 62.4 60 51.7
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.1e-07 62.0 60 51.7
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.1e-07 62.0 54 55.6
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.5e-07 61.6 48 60.4
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.5e-07 61.6 60 55.0
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.5e-07 61.6 60 48.3
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.5e-07 61.6 60 50.0
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.9e-07 61.2 60 50.0
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.9e-07 61.2 60 48.3
SEGI_40072 Sequoiadendron giganteum HOM05D000060 ORTHO05D386497 1.9e-07 61.2 66 54.5
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 3.3e-07 60.5 48 56.2
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.3e-07 60.5 60 51.7
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 3.3e-07 60.5 60 48.3
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 4.3e-07 60.1 60 46.7
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 4.3e-07 60.1 60 46.7
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 4.3e-07 60.1 46 60.9
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 5.6e-07 59.7 60 46.7
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 5.6e-07 59.7 60 46.7
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 5.6e-07 59.7 60 51.7
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 5.6e-07 59.7 84 41.7
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 7.3e-07 59.3 60 46.7
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 7.3e-07 59.3 60 46.7
SEGI_36927 Sequoiadendron giganteum HOM05D000284 ORTHO05D001229 7.3e-07 59.3 50 62.0
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 9.6e-07 58.9 71 43.7
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.2e-06 58.5 57 52.6
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.1e-06 57.8 60 48.3
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.1e-06 57.8 48 54.2
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 2.1e-06 57.8 60 48.3
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.8e-06 57.4 60 48.3
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 2.8e-06 57.4 60 48.3
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 3.6e-06 57.0 60 48.3
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 3.6e-06 57.0 60 48.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 6.2e-06 56.2 51 52.9
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 6.2e-06 56.2 48 56.2


User provided reference genes

Program Settings