Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 2.5e-169 598.6 284 100.0
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 5.2e-122 441.4 280 72.5
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.6e-121 439.1 282 72.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 3.3e-121 438.7 279 72.8
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 4.1e-119 431.8 282 70.9
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 2.0e-118 429.5 280 71.8
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 2.0e-118 429.5 278 71.6
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 2.6e-118 429.1 282 70.2
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 2.6e-118 429.1 279 70.3
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 4.5e-118 428.3 281 69.4
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.9e-118 427.9 281 69.4
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 7.7e-118 427.6 282 70.2
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.3e-117 426.8 279 70.6
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.3e-117 426.8 278 70.1
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.2e-117 426.0 282 69.1
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 2.2e-117 426.0 281 69.0
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 2.2e-117 426.0 280 68.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.2e-117 426.0 281 70.1
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.9e-117 425.6 280 69.3
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 3.8e-117 425.2 279 69.9
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 3.8e-117 425.2 279 69.9
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 6.5e-117 424.5 282 68.4
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.9e-116 422.9 313 64.2
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.9e-116 422.9 278 69.4
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 3.2e-116 422.2 279 69.2
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 4.2e-116 421.8 280 68.9
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 5.5e-116 421.4 282 68.8
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 5.5e-116 421.4 281 70.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 7.2e-116 421.0 282 69.1
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.2e-115 420.2 278 67.6
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.2e-115 420.2 280 68.6
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.6e-115 419.9 278 68.0
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.6e-115 419.9 278 68.0
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.6e-115 419.9 282 68.8
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.6e-115 419.9 281 70.1
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.7e-115 419.1 282 68.1
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.7e-115 419.1 281 68.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 2.7e-115 419.1 279 67.4
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.7e-115 419.1 282 67.4
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 2.7e-115 419.1 279 67.7
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 4.7e-115 418.3 278 67.3
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 4.7e-115 418.3 278 67.3
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 4.7e-115 418.3 280 69.3
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.1e-115 417.9 282 68.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 6.1e-115 417.9 282 68.1
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 8.0e-115 417.5 279 68.5
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.4e-114 416.8 282 68.4
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.4e-114 416.8 279 68.8
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 1.8e-114 416.4 279 68.5
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.3e-114 416.0 278 67.3
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.3e-114 416.0 279 68.5
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 2.3e-114 416.0 280 67.1
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 2.3e-114 416.0 279 68.1
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 3.0e-114 415.6 280 67.9
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 3.0e-114 415.6 281 68.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.0e-114 415.6 280 68.6
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 4.0e-114 415.2 279 66.7
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 5.2e-114 414.8 275 69.5
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.2e-114 414.8 280 68.6
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 5.2e-114 414.8 281 67.3
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 5.2e-114 414.8 279 67.7
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 6.8e-114 414.5 278 66.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 6.8e-114 414.5 281 67.3
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 6.8e-114 414.5 278 66.9
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.2e-113 413.7 274 70.1
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.5e-113 413.3 278 67.6
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 1.5e-113 413.3 278 66.9
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 3.4e-113 412.1 279 66.7
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.5e-113 411.0 279 68.1
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.7e-112 409.8 278 67.3
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 3.7e-112 408.7 278 66.2
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 8.3e-112 407.5 275 69.1
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.1e-111 407.1 286 65.7
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 5.4e-111 404.8 278 65.5
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 7.0e-111 404.4 280 65.7
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.2e-110 403.7 280 66.1
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.7e-110 402.5 267 68.5
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.5e-110 402.1 269 68.8
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.7e-109 399.8 266 69.2
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.9e-109 399.1 278 66.2
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 8.5e-109 397.5 284 66.5
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 4.2e-108 395.2 286 64.7
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 7.2e-108 394.4 264 68.2
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 7.2e-108 394.4 311 61.4
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.7e-107 392.5 282 65.2
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.0e-106 390.6 267 67.0
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.2e-105 387.1 276 63.8
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.6e-105 386.0 282 64.5
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.3e-104 383.6 276 65.6
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 8.3e-104 380.9 268 66.8
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.4e-103 380.2 276 63.0
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.4e-103 379.4 250 69.2
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 2.4e-103 379.4 250 68.4
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 9.1e-103 377.5 259 65.6
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 2.7e-102 375.9 296 61.5
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.8e-101 372.1 282 61.0
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.8e-101 372.1 282 61.0
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 7.2e-100 367.9 251 65.3
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.8e-99 365.9 251 65.3
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 4.0e-98 362.1 263 65.8
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 3.4e-97 359.0 265 61.5
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.0e-93 347.4 235 67.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 2.3e-93 346.3 271 58.7
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 8.6e-93 344.4 243 66.7
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.4e-90 337.0 269 58.0
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.3e-90 336.3 248 62.1
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.7e-88 330.1 270 57.8
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.3e-85 319.7 190 73.7
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 7.5e-81 304.7 268 55.2
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 2.2e-80 303.1 267 56.6
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.1e-79 298.9 420 41.0
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 4.4e-73 278.9 167 72.5
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.8e-73 278.5 414 39.6
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 2.9e-72 276.2 167 71.9
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.4e-71 273.9 176 68.8
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 4.1e-71 272.3 171 70.8
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.7e-69 266.9 274 47.1
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 9.6e-68 261.2 144 77.8
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 5.4e-63 245.4 305 42.6
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.6e-59 233.8 295 44.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 5.3e-58 228.8 159 65.4
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 2.6e-57 226.5 296 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 9.9e-57 224.6 144 66.7
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.9e-52 210.3 249 45.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.8e-48 196.1 135 71.9
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.4e-47 193.4 140 67.9
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 9.3e-47 191.4 248 43.5
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.4e-42 177.6 162 54.3
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.7e-40 170.6 223 38.6
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 8.7e-29 131.7 110 52.7
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 3.1e-26 123.2 70 72.9
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 6.9e-26 122.1 75 69.3
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.7e-24 117.5 72 65.3
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.7e-24 117.5 72 65.3
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.6e-20 103.6 75 65.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.3e-20 103.2 76 64.5
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 5.7e-20 102.4 80 60.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.3e-19 101.3 92 54.3
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.6e-17 93.6 80 61.2
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.3e-12 76.6 53 62.3
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 3.7e-11 73.2 85 45.9
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.2e-09 68.2 57 63.2
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 3.8e-08 63.2 172 27.3
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-06 57.8 80 43.8


User provided reference genes

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