Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26950 Sequoiadendron giganteum HOM05D004475 ORTHO05D005235 3.4e-138 495.0 249 100.0
SEGI_26247 Sequoiadendron giganteum HOM05D004475 ORTHO05D005235 7.0e-107 391.0 197 100.0
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 1.8e-14 84.0 82 52.4
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 1.8e-14 84.0 131 40.5
SMO356G0722 Selaginella moellendorffii HOM05D004956 ORTHO05D006284 4.1e-14 82.8 138 38.4
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 4.1e-14 82.8 79 51.9
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 9.1e-14 81.6 141 34.0
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 9.1e-14 81.6 104 41.3
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 1.2e-13 81.3 82 51.2
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 1.2e-13 81.3 104 43.3
Gohir.A02G105902 Gossypium hirsutum HOM05D004475 ORTHO05D005235 1.6e-13 80.9 106 44.3
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 3.5e-13 79.7 136 36.8
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 4.5e-13 79.3 93 45.2
Gorai.003G086800 Gossypium raimondii HOM05D004475 ORTHO05D005235 4.5e-13 79.3 111 42.3
Gohir.D03G073000 Gossypium hirsutum HOM05D004475 ORTHO05D005235 5.9e-13 79.0 111 42.3
Sed0026196 Sechium edule HOM05D004475 ORTHO05D005235 5.9e-13 79.0 133 38.3
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 5.9e-13 79.0 109 47.7
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 7.7e-13 78.6 103 45.6
Duzib093G1491 Durio zibethinus HOM05D004475 ORTHO05D005235 1.0e-12 78.2 105 45.7
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 1.3e-12 77.8 105 41.9
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 2.2e-12 77.0 95 45.3
TWI74G0419 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 2.2e-12 77.0 143 37.8
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 2.9e-12 76.6 99 45.5
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 2.9e-12 76.6 84 47.6
Duzib128G1477 Durio zibethinus HOM05D004475 ORTHO05D005235 2.9e-12 76.6 85 49.4
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 2.9e-12 76.6 137 37.2
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 2.9e-12 76.6 137 35.8
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 3.8e-12 76.3 105 40.0
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 3.8e-12 76.3 136 36.0
Oeu023134.1 Olea europaea HOM05D004475 ORTHO05D005235 3.8e-12 76.3 100 44.0
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 3.8e-12 76.3 137 35.8
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 3.8e-12 76.3 105 41.0
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 5.0e-12 75.9 85 45.9
HanXRQChr10g0298201 Helianthus annuus HOM05D004475 ORTHO05D005235 5.0e-12 75.9 105 44.8
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 6.5e-12 75.5 130 39.2
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 8.5e-12 75.1 131 39.7
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 8.5e-12 75.1 137 37.2
SGA_v2.0_scaffold105G30365 Striga asiatica HOM05D004475 ORTHO05D005235 8.5e-12 75.1 80 47.5
Zm00001eb317650 Zea mays HOM05D004475 ORTHO05D005235 1.1e-11 74.7 81 49.4
Actinidia17673 Actinidia chinensis HOM05D004475 ORTHO05D005235 1.5e-11 74.3 98 45.9
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 1.5e-11 74.3 100 40.0
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 1.5e-11 74.3 100 40.0
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 1.9e-11 73.9 127 39.4
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 2.5e-11 73.6 129 38.0
Migut.K00106 Erythranthe guttata HOM05D004475 ORTHO05D005235 2.5e-11 73.6 88 40.9
TWI53G0253 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 2.5e-11 73.6 102 43.1
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 3.2e-11 73.2 80 45.0
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 3.2e-11 73.2 129 38.0
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 4.2e-11 72.8 82 51.2
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 4.2e-11 72.8 104 38.5
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 4.2e-11 72.8 135 37.8
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 4.2e-11 72.8 137 37.2
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 5.5e-11 72.4 102 42.2
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 5.5e-11 72.4 106 41.5
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 5.5e-11 72.4 137 36.5
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 5.5e-11 72.4 131 42.0
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 5.5e-11 72.4 140 35.7
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 7.2e-11 72.0 75 50.7
TWI77G0736 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 7.2e-11 72.0 137 38.0
HPP92_017986 Vanilla planifolia HOM05D004475 ORTHO05D005235 7.2e-11 72.0 138 35.5
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 9.4e-11 71.6 130 36.9
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 9.4e-11 71.6 105 41.0
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 9.4e-11 71.6 137 35.0
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 1.2e-10 71.2 86 46.5
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 1.2e-10 71.2 129 38.0
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 1.2e-10 71.2 87 43.7
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.2e-10 71.2 87 43.7
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.2e-10 71.2 87 43.7
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 1.2e-10 71.2 87 46.0
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 1.2e-10 71.2 124 38.7
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 1.6e-10 70.9 130 38.5
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.6e-10 70.9 81 45.7
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 1.6e-10 70.9 99 44.4
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 2.1e-10 70.5 105 42.9
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 2.1e-10 70.5 131 35.9
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 2.1e-10 70.5 113 38.1
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 2.7e-10 70.1 78 43.6
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 3.6e-10 69.7 130 36.2
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 3.6e-10 69.7 76 48.7
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 3.6e-10 69.7 81 45.7
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 3.6e-10 69.7 91 44.0
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 3.6e-10 69.7 141 34.8
Pp3c21_18160 Physcomitrium patens HOM05D004956 ORTHO05D005235 3.6e-10 69.7 148 33.8
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 3.6e-10 69.7 78 43.6
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 3.6e-10 69.7 78 42.3
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 3.6e-10 69.7 117 35.9
Zm00001eb379540 Zea mays HOM05D004475 ORTHO05D005235 3.6e-10 69.7 132 39.4
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 4.7e-10 69.3 196 31.6
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 6.1e-10 68.9 129 37.2
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 6.1e-10 68.9 137 34.3
Os06g0301100 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 6.1e-10 68.9 100 40.0
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 8.0e-10 68.6 103 42.7
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 8.0e-10 68.6 103 42.7
MSTRG.10806 Avicennia marina HOM05D004475 ORTHO05D005235 8.0e-10 68.6 79 44.3
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 8.0e-10 68.6 105 38.1
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 8.0e-10 68.6 118 34.7
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 1.0e-09 68.2 79 44.3
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 1.0e-09 68.2 79 44.3
Zm00001eb301150 Zea mays HOM05D004475 ORTHO05D005235 1.0e-09 68.2 132 38.6
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 1.4e-09 67.8 92 41.3
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 1.4e-09 67.8 115 34.8
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 1.4e-09 67.8 102 42.2
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 1.8e-09 67.4 111 40.5
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 1.8e-09 67.4 126 36.5
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 1.8e-09 67.4 112 42.0
Pp3c18_6510 Physcomitrium patens HOM05D004956 ORTHO05D006284 1.8e-09 67.4 142 33.1
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 2.3e-09 67.0 91 42.9
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 2.3e-09 67.0 122 37.7
arahy.Tifrunner.gnm1.ann1.65IVB9 Arachis hypogaea HOM05D004475 ORTHO05D005235 3.0e-09 66.6 115 38.3
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 3.0e-09 66.6 79 45.6
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 3.0e-09 66.6 91 46.2
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 3.0e-09 66.6 143 32.9
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 4.0e-09 66.2 84 44.0
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 4.0e-09 66.2 105 37.1
Os04g0470300 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 4.0e-09 66.2 72 48.6
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 5.2e-09 65.9 84 45.2
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 6.7e-09 65.5 96 41.7
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 6.7e-09 65.5 88 39.8
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 8.8e-09 65.1 103 35.9
AagrBONN_evm.TU.Sc2ySwM_362.797 Anthoceros agrestis HOM05D004956 ORTHO05D006284 8.8e-09 65.1 64 54.7
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 8.8e-09 65.1 115 38.3
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 8.8e-09 65.1 109 39.4
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 8.8e-09 65.1 114 38.6
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 8.8e-09 65.1 114 39.5
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 8.8e-09 65.1 96 41.7
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 1.2e-08 64.7 123 35.8
Sabra04G0153800 Salix brachista HOM05D004956 ORTHO05D006284 1.5e-08 64.3 251 27.5
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 2.0e-08 63.9 134 33.6
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 3.3e-08 63.2 133 34.6
VMungo1383G1580 Vigna mungo HOM05D004475 ORTHO05D005235 3.3e-08 63.2 142 33.8
Dinv25347 Davidia involucrata HOM05D004956 ORTHO05D006284 4.4e-08 62.8 255 25.5
SMO285G0004 Selaginella moellendorffii HOM05D004956 ORTHO05D005235 4.4e-08 62.8 74 40.5
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 5.7e-08 62.4 96 40.6
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 9.7e-08 61.6 136 35.3
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 9.7e-08 61.6 137 33.6
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 9.7e-08 61.6 113 36.3
Ah.15g089990 Amaranthus hybridus HOM05D004956 ORTHO05D006284 1.3e-07 61.2 256 24.6
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 1.3e-07 61.2 105 38.1
THA.LOC104806171 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 1.3e-07 61.2 205 29.8
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 2.8e-07 60.1 128 35.9
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 3.7e-07 59.7 137 30.7
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 3.7e-07 59.7 96 40.6
CiPaw.09G221700 Carya illinoinensis HOM05D004956 ORTHO05D006284 6.3e-07 58.9 204 28.4
TAR633G0630 Trochodendron aralioides HOM05D004956 ORTHO05D006284 6.3e-07 58.9 276 23.9
Pp3c19_13340 Physcomitrium patens HOM05D004956 ORTHO05D006284 1.1e-06 58.2 68 42.6
Ah.08g209270 Amaranthus hybridus HOM05D004956 ORTHO05D006284 1.4e-06 57.8 208 26.4
CAN.G120.2 Capsicum annuum HOM05D004956 ORTHO05D006284 1.4e-06 57.8 203 26.1
Duzib268G1093 Durio zibethinus HOM05D004956 ORTHO05D006284 2.4e-06 57.0 253 27.3
Sc20g0007000 Simmondsia chinensis HOM05D004956 ORTHO05D006284 2.4e-06 57.0 213 26.8
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 3.1e-06 56.6 185 28.6
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 7.0e-06 55.5 130 33.1
Eucgr.K01286 Eucalyptus grandis HOM05D004956 ORTHO05D006284 7.0e-06 55.5 210 27.1
Lsat_1_v5_gn_8_110501 Lactuca sativa HOM05D004956 ORTHO05D006284 7.0e-06 55.5 209 25.8
Lalb_Chr19g0123941 Lupinus albus HOM05D004956 ORTHO05D006284 7.0e-06 55.5 204 27.0


User provided reference genes

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