Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26862 Sequoiadendron giganteum HOM05D000371 ORTHO05D006340 2.6e-64 248.4 116 100.0
Sed0013666 Sechium edule HOM05D000371 ORTHO05D006340 1.1e-22 110.2 60 80.0
Psat1g215120 Pisum sativum HOM05D000371 ORTHO05D006340 4.2e-22 108.2 80 65.0
Manes.07G036800 Manihot esculenta HOM05D000371 ORTHO05D006340 7.2e-22 107.5 57 80.7
Actinidia01164 Actinidia chinensis HOM05D000371 ORTHO05D006340 1.6e-21 106.3 57 78.9
Lsat_1_v5_gn_9_41400 Lactuca sativa HOM05D000371 ORTHO05D006340 1.6e-21 106.3 57 80.7
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 2.1e-21 105.9 64 73.4
TPR.G9488 Trifolium pratense HOM05D000371 ORTHO05D006340 2.1e-21 105.9 64 75.0
arahy.Tifrunner.gnm1.ann1.ASG1PZ Arachis hypogaea HOM05D000371 ORTHO05D006340 2.7e-21 105.5 64 73.4
Haze_04579 Corylus avellana HOM05D000371 ORTHO05D006340 2.7e-21 105.5 74 67.6
Glyma.13G258500 Glycine max HOM05D000371 ORTHO05D006340 2.7e-21 105.5 65 73.8
QL11p023863 Quercus lobata HOM05D000371 ORTHO05D006340 2.7e-21 105.5 64 73.4
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.6e-21 105.1 64 71.9
ECA232G0442 Erigeron canadensis HOM05D000371 ORTHO05D006340 4.7e-21 104.8 57 78.9
Phvul.006G203300 Phaseolus vulgaris HOM05D000371 ORTHO05D006340 4.7e-21 104.8 87 58.6
CSS0029316 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006340 6.1e-21 104.4 91 59.3
CiPaw.05G030900 Carya illinoinensis HOM05D000371 ORTHO05D006340 6.1e-21 104.4 64 71.9
Lalb_Chr18g0060451 Lupinus albus HOM05D000371 ORTHO05D006340 6.1e-21 104.4 59 74.6
MBI02_g19395_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006340 8.0e-21 104.0 57 78.9
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 1.0e-20 103.6 57 77.2
Dinv15989 Davidia involucrata HOM05D000371 ORTHO05D006340 1.0e-20 103.6 64 71.9
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.0e-20 103.6 64 70.3
Lj6g0013164 Lotus japonicus HOM05D000371 ORTHO05D006340 1.0e-20 103.6 57 77.2
CANSAT11G2503 Cannabis sativa HOM05D000371 ORTHO05D006340 1.4e-20 103.2 64 71.9
Ca_00157_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006340 1.4e-20 103.2 64 70.3
Ciclev10006261m.g Citrus clementina HOM05D000371 ORTHO05D006340 1.4e-20 103.2 64 70.3
Atru.BG.32.p Acer truncatum HOM05D000371 ORTHO05D006340 1.8e-20 102.8 64 71.9
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.8e-20 102.8 64 70.3
VMungo0540G0136 Vigna mungo HOM05D000371 ORTHO05D006340 1.8e-20 102.8 57 75.4
GSVIVG01015733001 Vitis vinifera HOM05D000371 ORTHO05D006340 1.8e-20 102.8 57 75.4
arahy.Tifrunner.gnm1.ann1.WN06RC Arachis hypogaea HOM05D000371 ORTHO05D006340 2.3e-20 102.4 64 71.9
Cfa005697 Carpinus fangiana HOM05D000371 ORTHO05D006340 4.0e-20 101.7 57 77.2
FvH4_2g11800 Fragaria vesca HOM05D000371 ORTHO05D006340 4.0e-20 101.7 64 70.3
FAN15G0960 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.0e-20 101.7 64 70.3
FAN20G0951 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.0e-20 101.7 64 70.3
Hma1.2p1_1093F.1_g256100 Hydrangea macrophylla HOM05D000371 ORTHO05D006340 4.0e-20 101.7 57 75.4
RcHm_v2.0_Chr6g0249601 Rosa chinensis HOM05D000371 ORTHO05D006340 4.0e-20 101.7 64 70.3
Eucgr.I02629 Eucalyptus grandis HOM05D000371 ORTHO05D006340 5.2e-20 101.3 64 70.3
Sc08g0003840 Simmondsia chinensis HOM05D000371 ORTHO05D006340 5.2e-20 101.3 57 75.4
TAR381G1119 Trochodendron aralioides HOM05D000371 ORTHO05D006340 5.2e-20 101.3 57 75.4
Actinidia00294 Actinidia chinensis HOM05D000371 ORTHO05D006340 6.8e-20 100.9 54 81.5
Nn1g05528 Nelumbo nucifera HOM05D000371 ORTHO05D006340 6.8e-20 100.9 56 75.0
TWI14G0489 Tripterygium wilfordii HOM05D000371 ORTHO05D006340 6.8e-20 100.9 64 70.3
Aqoxy5G01319 Aquilegia oxysepala HOM05D000371 ORTHO05D006340 8.8e-20 100.5 52 82.7
MSTRG.5277 Avicennia marina HOM05D000371 ORTHO05D006340 8.8e-20 100.5 57 73.7
ClCG09G015820 Citrullus lanatus HOM05D000371 ORTHO05D006340 8.8e-20 100.5 57 73.7
Solyc01g105710.3 Solanum lycopersicum HOM05D000371 ORTHO05D006340 8.8e-20 100.5 64 71.9
Sopen01g048150 Solanum pennellii HOM05D000371 ORTHO05D006340 8.8e-20 100.5 64 71.9
PGSC0003DMG400033579 Solanum tuberosum HOM05D000371 ORTHO05D006340 8.8e-20 100.5 64 71.9
DCAR_004188 Daucus carota HOM05D000371 ORTHO05D006340 1.2e-19 100.1 57 75.4
HanXRQChr15g0491901 Helianthus annuus HOM05D000371 ORTHO05D006340 1.2e-19 100.1 57 77.2
Medtr2g009390 Medicago truncatula HOM05D000371 ORTHO05D006340 1.2e-19 100.1 64 68.8
Oeu027061.1 Olea europaea HOM05D000371 ORTHO05D006340 1.2e-19 100.1 64 70.3
THA.LOC104818449 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 1.2e-19 100.1 84 57.1
Aa31LG3G17510 Aethionema arabicum HOM05D000371 ORTHO05D006340 1.5e-19 99.8 57 73.7
Aqoxy1G01043 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 1.5e-19 99.8 57 71.9
RhsimUnG0008400 Rhododendron simsii HOM05D000371 ORTHO05D006340 1.5e-19 99.8 57 73.7
RhsimUnG0106200 Rhododendron simsii HOM05D000371 ORTHO05D006340 1.5e-19 99.8 57 73.7
CsaV3_7G006970 Cucumis sativus L. HOM05D000371 ORTHO05D006340 2.0e-19 99.4 57 73.7
MD04G1047400 Malus domestica HOM05D000371 ORTHO05D006340 2.0e-19 99.4 57 75.4
Potri.007G113100 Populus trichocarpa HOM05D000371 ORTHO05D006340 2.0e-19 99.4 57 73.7
AagrBONN_evm.TU.Sc2ySwM_344.182 Anthoceros agrestis HOM05D000371 ORTHO05D006340 2.6e-19 99.0 57 73.7
MSTRG.27813 Avicennia marina HOM05D000371 ORTHO05D006340 2.6e-19 99.0 57 71.9
Migut.B00563 Erythranthe guttata HOM05D000371 ORTHO05D006340 2.6e-19 99.0 57 71.9
PGR142G0954 Punica granatum HOM05D000371 ORTHO05D006340 2.6e-19 99.0 64 70.3
SGA_v2.0_scaffold14G07147 Striga asiatica HOM05D000371 ORTHO05D006340 2.6e-19 99.0 84 57.1
Sed0020537 Sechium edule HOM05D000371 ORTHO05D006340 3.4e-19 98.6 57 71.9
THA.LOC104799807 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 3.4e-19 98.6 57 71.9
CAN.G523.27 Capsicum annuum HOM05D000371 ORTHO05D006340 4.4e-19 98.2 64 70.3
COL.COLO4_32358 Corchorus olitorius HOM05D000371 ORTHO05D006340 4.4e-19 98.2 64 67.2
Gohir.A03G176100 Gossypium hirsutum HOM05D000371 ORTHO05D006340 4.4e-19 98.2 64 65.6
Gohir.D02G199900 Gossypium hirsutum HOM05D000371 ORTHO05D006340 4.4e-19 98.2 64 65.6
Gorai.005G224600 Gossypium raimondii HOM05D000371 ORTHO05D006340 4.4e-19 98.2 64 65.6
SMO365G0026 Selaginella moellendorffii HOM05D000371 ORTHO05D006340 5.7e-19 97.8 64 68.8
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 7.5e-19 97.4 56 76.8
Migut.N01091 Erythranthe guttata HOM05D000371 ORTHO05D006340 7.5e-19 97.4 57 70.2
Carub.0008s2515 Capsella rubella HOM05D000371 ORTHO05D006340 9.7e-19 97.1 57 71.9
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 9.7e-19 97.1 64 65.6
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 9.7e-19 97.1 64 65.6
SalBow6G0133 Salvia bowleyana HOM05D000371 ORTHO05D006340 9.7e-19 97.1 57 73.7
SalBow6G1985 Salvia bowleyana HOM05D000371 ORTHO05D006340 9.7e-19 97.1 57 73.7
SGA_v2.0_scaffold83G26354 Striga asiatica HOM05D000371 ORTHO05D006340 9.7e-19 97.1 84 56.0
TAR625G1317 Trochodendron aralioides HOM05D000371 ORTHO05D006340 1.3e-18 96.7 57 70.2
Duzib132G1081 Durio zibethinus HOM05D000371 ORTHO05D006340 1.7e-18 96.3 64 64.1
Prupe.8G067900 Prunus persica HOM05D000371 ORTHO05D006340 1.7e-18 96.3 64 67.2
SalBow8G3269 Salvia bowleyana HOM05D000371 ORTHO05D006340 1.7e-18 96.3 57 70.2
AT5G64350 Arabidopsis thaliana HOM05D000371 ORTHO05D006340 2.2e-18 95.9 57 70.2
Nitab4.5_0001264g0200 Nicotiana tabacum HOM05D000371 ORTHO05D006340 2.2e-18 95.9 57 71.9
ATR0022G017 Amborella trichopoda HOM05D000371 ORTHO05D006340 2.8e-18 95.5 50 80.0
EL10Ac9g22085 Beta vulgaris HOM05D000371 ORTHO05D006340 2.8e-18 95.5 64 65.6
Thecc.02G131800 Theobroma cacao HOM05D000371 ORTHO05D006340 2.8e-18 95.5 64 64.1
AUR62027120 Chenopodium quinoa HOM05D000371 ORTHO05D006340 4.8e-18 94.7 64 65.6
BraA06t26044Z Brassica rapa HOM05D000371 ORTHO05D006340 6.3e-18 94.4 64 65.6
A06p31020 Brassica napus HOM05D000371 ORTHO05D006340 8.3e-18 94.0 57 70.2
PSO541G0529 Papaver somniferum HOM05D000371 ORTHO05D006340 8.3e-18 94.0 57 70.2
PSO675G6035 Papaver somniferum HOM05D000371 ORTHO05D006340 8.3e-18 94.0 57 70.2
AL8G41710 Arabidopsis lyrata HOM05D000371 ORTHO05D006340 1.1e-17 93.6 57 68.4
BcaC04g23321 Brassica carinata HOM05D000371 ORTHO05D006340 1.1e-17 93.6 57 66.7
A09p08640 Brassica napus HOM05D000371 ORTHO05D006340 1.1e-17 93.6 57 66.7
C03p61940 Brassica napus HOM05D000371 ORTHO05D006340 1.1e-17 93.6 51 76.5
BraA09t36513Z Brassica rapa HOM05D000371 ORTHO05D006340 1.1e-17 93.6 57 66.7
Cc02_g21010 Coffea canephora HOM05D000371 ORTHO05D006340 1.1e-17 93.6 57 68.4
Thhalv10005167m.g Eutrema salsugineum HOM05D000371 ORTHO05D006340 1.1e-17 93.6 57 68.4
Nitab4.5_0002650g0070 Nicotiana tabacum HOM05D000371 ORTHO05D006340 1.4e-17 93.2 57 70.2
PRCOL_00001212 Prasinoderma coloniale HOM05D000371 ORTHO05D006340 1.4e-17 93.2 64 64.1
Hund23433 Selenicereus undatus HOM05D000371 ORTHO05D006340 1.4e-17 93.2 57 68.4
Hund23435 Selenicereus undatus HOM05D000371 ORTHO05D006340 1.4e-17 93.2 57 68.4
Zm00001eb255600 Zea mays HOM05D000371 ORTHO05D006340 2.4e-17 92.4 64 62.5
BolC3t18453H Brassica oleracea HOM05D000371 ORTHO05D006340 3.1e-17 92.0 57 66.7
CARHR278290 Cardamine hirsuta HOM05D000371 ORTHO05D006340 3.1e-17 92.0 57 66.7
Sp2g27420 Schrenkiella parvula HOM05D000371 ORTHO05D006340 3.1e-17 92.0 57 66.7
AUR62012896 Chenopodium quinoa HOM05D000371 ORTHO05D006340 1.2e-16 90.1 64 62.5
Glyma.15G056800 Glycine max HOM05D000371 ORTHO05D006340 1.2e-16 90.1 85 52.9
PSO675G2104 Papaver somniferum HOM05D007460 ORTHO05D009396 2.7e-16 89.0 59 67.8
BcaB07g29739 Brassica carinata HOM05D000371 ORTHO05D006340 3.5e-16 88.6 57 64.9
PSO541G5676 Papaver somniferum HOM05D007460 ORTHO05D009396 3.5e-16 88.6 72 59.7
unitig_62.g23629 Utricularia gibba HOM05D000371 ORTHO05D006340 3.5e-16 88.6 73 58.9
Pp3c1_27870 Physcomitrium patens HOM05D000371 ORTHO05D006340 5.9e-16 87.8 64 57.8
FAN21G0724 Fragaria x ananassa HOM05D000371 ORTHO05D006340 7.7e-16 87.4 51 70.6
Mapoly0147s0023 Marchantia polymorpha HOM05D001298 ORTHO05D006340 7.7e-16 87.4 64 62.5
Os02g0760300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006340 7.7e-16 87.4 57 61.4
CBR_g19026 Chara braunii HOM05D000371 ORTHO05D006340 3.8e-15 85.1 56 66.1
Mapoly0091s0066 Marchantia polymorpha HOM05D000371 ORTHO05D006340 3.8e-15 85.1 57 68.4
SalBow8G3846 Salvia bowleyana HOM05D000371 ORTHO05D006340 1.1e-14 83.6 42 83.3
CSS0037053 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006340 8.0e-13 77.4 39 87.2
MELO3C018596.2 Cucumis melo HOM05D000371 ORTHO05D006340 8.0e-13 77.4 46 71.7
MCO04G153 Micromonas commoda HOM05D000371 ORTHO05D006340 5.2e-12 74.7 45 66.7
BolC9t53886H Brassica oleracea HOM05D000371 ORTHO05D006340 8.8e-12 73.9 57 54.4
vmacro01851 Vaccinium macrocarpon HOM05D000371 ORTHO05D006340 4.4e-11 71.6 106 39.6
C02p63310 Brassica napus HOM05D000371 ORTHO05D006340 2.2e-10 69.3 46 60.9
BolC2t12401H Brassica oleracea HOM05D000371 ORTHO05D006340 2.2e-10 69.3 46 60.9
BcaC03g18259 Brassica carinata HOM05D000160 ORTHO05D001344 6.3e-10 67.8 45 60.0
BcaC01g03603 Brassica carinata HOM05D000371 ORTHO05D006340 1.1e-09 67.0 37 73.0
TWI59G1065 Tripterygium wilfordii HOM05D000371 ORTHO05D006340 1.4e-09 66.6 39 76.9
C03p50660 Brassica napus HOM05D000371 ORTHO05D006340 5.4e-09 64.7 36 72.2
ECA232G5016 Erigeron canadensis HOM05D000371 ORTHO05D006340 1.0e-07 60.5 62 48.4
BcaB07g29737 Brassica carinata HOM05D000371 ORTHO05D006340 2.3e-07 59.3 39 59.0
C08p49860 Brassica napus HOM05D000371 ORTHO05D006340 8.6e-07 57.4 33 72.7
Pp3c9_18040 Physcomitrium patens HOM05D000371 ORTHO05D004413 1.5e-06 56.6 33 66.7
PRCOL_00006761 Prasinoderma coloniale HOM05D000371 ORTHO05D004413 1.5e-06 56.6 50 50.0
MCO15G095 Micromonas commoda HOM05D000371 ORTHO05D006340 1.9e-06 56.2 49 55.1
Cre11.g479050 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D004413 2.5e-06 55.8 45 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3862 Anthoceros agrestis HOM05D000371 ORTHO05D001484 7.2e-06 54.3 49 51.0
BolC7t43919H Brassica oleracea HOM05D000371 ORTHO05D006340 7.2e-06 54.3 50 54.0
Pp3c15_20490 Physcomitrium patens HOM05D000371 ORTHO05D004413 9.5e-06 53.9 33 63.6
Pp3c19_2600 Physcomitrium patens HOM05D000371 ORTHO05D001484 9.5e-06 53.9 44 59.1


User provided reference genes

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