Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.3e-154 549.7 280 100.0
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.5e-86 323.6 295 63.4
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 3.4e-86 322.4 209 78.9
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 3.4e-86 322.4 209 78.9
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 7.7e-86 321.2 198 82.8
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.8e-85 318.9 196 82.7
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 5.0e-85 318.5 198 80.3
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 8.5e-85 317.8 205 78.5
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 8.5e-85 317.8 191 83.8
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 8.5e-85 317.8 202 81.7
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 8.5e-85 317.8 291 64.3
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 8.5e-85 317.8 293 62.5
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 8.5e-85 317.8 210 79.5
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.1e-84 317.4 201 80.6
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.1e-84 317.4 202 79.7
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.1e-84 317.4 191 83.2
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.4e-84 317.0 191 83.8
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.9e-84 316.6 205 78.0
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.9e-84 316.6 203 81.3
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 1.9e-84 316.6 188 84.6
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 3.2e-84 315.8 291 64.9
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 3.2e-84 315.8 202 79.7
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.2e-84 315.8 296 63.9
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 4.2e-84 315.5 210 79.0
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 4.2e-84 315.5 185 85.9
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.5e-84 315.1 205 79.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 5.5e-84 315.1 284 64.4
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 5.5e-84 315.1 196 81.1
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 7.2e-84 314.7 191 83.2
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 7.2e-84 314.7 294 62.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 7.2e-84 314.7 191 82.7
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 7.2e-84 314.7 203 80.8
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 7.2e-84 314.7 185 85.9
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 7.2e-84 314.7 185 86.5
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 9.4e-84 314.3 184 86.4
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.6e-83 313.5 206 78.6
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.6e-83 313.5 199 80.4
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 2.1e-83 313.2 285 64.2
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.1e-83 313.2 184 84.8
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 2.7e-83 312.8 206 78.2
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.7e-83 312.8 206 78.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.7e-83 312.8 285 65.6
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 3.6e-83 312.4 186 84.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 3.6e-83 312.4 213 77.5
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 4.7e-83 312.0 185 84.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 4.7e-83 312.0 199 80.9
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 4.7e-83 312.0 219 74.9
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 4.7e-83 312.0 285 63.2
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 6.1e-83 311.6 191 82.2
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 6.1e-83 311.6 208 76.0
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.1e-83 311.6 186 84.9
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.0e-82 310.8 282 61.0
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.0e-82 310.8 195 81.0
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.8e-82 310.1 184 85.3
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.3e-82 309.7 294 60.9
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.3e-82 309.7 195 80.5
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.9e-82 308.9 206 77.2
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 3.9e-82 308.9 184 86.4
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.9e-82 308.9 191 79.6
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 5.1e-82 308.5 185 84.9
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 5.1e-82 308.5 188 83.0
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 5.1e-82 308.5 188 83.0
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 8.8e-82 307.8 186 84.4
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 8.8e-82 307.8 185 84.9
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.1e-81 307.4 206 76.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.1e-81 307.4 185 85.4
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.1e-81 307.4 185 83.8
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.1e-81 307.4 185 83.8
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 1.1e-81 307.4 175 86.9
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.1e-81 307.4 196 80.6
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.5e-81 307.0 197 80.2
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.5e-81 307.0 293 62.1
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.0e-81 306.6 188 82.4
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.0e-81 306.6 188 82.4
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 2.6e-81 306.2 286 62.6
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 3.3e-81 305.8 204 77.5
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 4.4e-81 305.4 213 75.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 4.4e-81 305.4 195 80.5
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 5.7e-81 305.1 195 80.0
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 5.7e-81 305.1 185 83.2
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 7.4e-81 304.7 191 79.6
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.3e-80 303.9 213 74.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.2e-80 303.1 194 81.4
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 2.2e-80 303.1 295 60.3
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 2.2e-80 303.1 283 62.5
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.8e-80 302.8 191 78.0
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.7e-80 302.4 175 86.9
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 4.8e-80 302.0 296 60.8
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 4.8e-80 302.0 171 86.5
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.8e-80 302.0 287 61.3
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 6.3e-80 301.6 287 61.3
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 8.2e-80 301.2 303 60.1
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.1e-79 300.8 175 86.3
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.4e-79 300.4 195 79.5
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.4e-79 300.4 195 79.5
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.4e-79 300.4 293 62.1
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 1.4e-79 300.4 291 61.5
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.4e-79 300.4 280 64.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.8e-79 300.1 286 60.5
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.4e-79 299.7 297 60.9
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.4e-79 299.7 297 60.9
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.4e-79 299.7 194 80.4
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 3.1e-79 299.3 171 86.5
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 3.1e-79 299.3 287 62.0
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.2e-78 297.4 184 81.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 3.5e-78 295.8 286 60.8
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.3e-77 293.9 185 79.5
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.9e-77 292.7 171 83.0
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.9e-76 290.0 155 92.9
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.0e-74 282.7 277 62.8
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.3e-72 277.3 277 59.6
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 4.8e-72 275.4 157 87.3
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 2.6e-70 269.6 155 86.5
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.5e-68 263.1 190 74.2
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 9.8e-65 251.1 134 94.0
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.8e-63 246.9 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 3.1e-63 246.1 179 70.4
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.5e-60 237.3 263 57.0
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 2.1e-59 233.4 152 79.6
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 3.6e-59 232.6 160 69.4
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 8.0e-59 231.5 146 81.5
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.0e-58 231.1 159 75.5
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 6.8e-58 228.4 193 67.4
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.6e-57 226.5 244 56.6
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.8e-56 223.0 182 68.1
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.7e-53 213.8 185 65.4
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 4.9e-48 195.7 127 79.5
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.9e-45 186.4 121 78.5
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 6.8e-42 175.3 170 60.6
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 3.0e-37 159.8 90 90.0
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 6.6e-37 158.7 89 88.8
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.6e-35 152.9 164 51.8
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.2e-24 117.1 146 50.7
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 7.8e-22 108.6 78 66.7
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.1e-20 104.8 178 43.8
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.9e-20 104.0 78 64.1
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.6e-20 102.4 86 65.1
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.2e-19 101.3 55 85.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 9.6e-12 75.1 69 60.9


User provided reference genes

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