Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26780 Sequoiadendron giganteum HOM05D005232 ORTHO05D006389 0.0e+00 2082.8 1150 100.0
ATR0618G373 Amborella trichopoda HOM05D005232 ORTHO05D006389 1.2e-172 611.7 1061 45.0
TAR375G0877 Trochodendron aralioides HOM05D005232 ORTHO05D006389 6.2e-166 589.3 1003 43.8
Nn1g01560 Nelumbo nucifera HOM05D005232 ORTHO05D006389 1.1e-151 542.0 1038 41.7
Aqoxy7G00280 Aquilegia oxysepala HOM05D005232 ORTHO05D006389 2.5e-143 514.2 850 44.8
TAR629G2045 Trochodendron aralioides HOM05D005232 ORTHO05D006389 1.3e-136 491.9 998 41.4
CDE11G0704 Ceratophyllum demersum HOM05D005232 ORTHO05D006389 3.0e-136 490.7 994 40.6
Cfa016269 Carpinus fangiana HOM05D005232 ORTHO05D006389 5.1e-136 490.0 1035 40.5
Haze_00026 Corylus avellana HOM05D005232 ORTHO05D006389 9.7e-135 485.7 1000 41.1
CiPaw.05G164300 Carya illinoinensis HOM05D005232 ORTHO05D006389 1.6e-134 485.0 981 41.1
Thecc.08G165200 Theobroma cacao HOM05D005232 ORTHO05D006389 8.2e-134 482.6 1033 41.0
QL09p013403 Quercus lobata HOM05D005232 ORTHO05D006389 6.1e-129 466.5 895 41.9
Gohir.D07G079300 Gossypium hirsutum HOM05D005232 ORTHO05D006389 2.5e-127 461.1 619 49.4
Gorai.001G083900 Gossypium raimondii HOM05D005232 ORTHO05D006389 2.8e-126 457.6 662 47.4
Ciclev10004180m.g Citrus clementina HOM05D005232 ORTHO05D006389 6.3e-126 456.4 984 39.6
CsaV3_4G004180 Cucumis sativus L. HOM05D005232 ORTHO05D006389 6.3e-126 456.4 960 40.9
Gohir.A07G074600 Gossypium hirsutum HOM05D005232 ORTHO05D006389 8.2e-126 456.1 668 46.9
CSS0049575 Camellia sinensis var. sinensis HOM05D005232 ORTHO05D006389 1.4e-125 455.3 544 53.7
Dinv13548 Davidia involucrata HOM05D005232 ORTHO05D006389 2.4e-125 454.5 983 39.8
Prupe.2G298500 Prunus persica HOM05D005232 ORTHO05D006389 4.5e-124 450.3 1002 39.1
Potri.015G147200 Populus trichocarpa HOM05D005232 ORTHO05D006389 5.9e-124 449.9 1017 39.9
Actinidia22445 Actinidia chinensis HOM05D005232 ORTHO05D006389 1.0e-123 449.1 950 38.1
Manes.14G024000 Manihot esculenta HOM05D005232 ORTHO05D006389 1.7e-123 448.4 864 41.9
Lj8A722G14 Lonicera japonica HOM05D005232 ORTHO05D006389 5.5e-122 443.4 923 39.3
Sabra15G0156100 Salix brachista HOM05D005232 ORTHO05D006389 2.1e-121 441.4 992 40.8
MD07G1276200 Malus domestica HOM05D005232 ORTHO05D006389 7.9e-121 439.5 874 42.1
GSVIVG01028893001 Vitis vinifera HOM05D005232 ORTHO05D006389 1.8e-120 438.3 811 43.4
TWI39G1086 Tripterygium wilfordii HOM05D005232 ORTHO05D006389 3.0e-120 437.6 894 43.1
Duzib170G0925 Durio zibethinus HOM05D005232 ORTHO05D006389 3.9e-120 437.2 853 40.4
Atru.chr1.399 Acer truncatum HOM05D005232 ORTHO05D006389 1.1e-119 435.6 1042 38.4
TWI14G0968 Tripterygium wilfordii HOM05D005232 ORTHO05D006389 7.4e-119 433.0 1043 38.9
CDE05G3165 Ceratophyllum demersum HOM05D005232 ORTHO05D006389 2.0e-116 424.9 483 56.7
ClCG07G016960 Citrullus lanatus HOM05D005232 ORTHO05D006389 7.7e-116 422.9 1013 38.5
MELO3C017648.2 Cucumis melo HOM05D005232 ORTHO05D006389 1.0e-115 422.5 1017 38.8
PSO528G0151 Papaver somniferum HOM05D005232 ORTHO05D006389 2.5e-114 417.9 629 46.7
PGR102G0407 Punica granatum HOM05D005232 ORTHO05D006389 3.2e-114 417.5 795 41.9
SalBow7G4258 Salvia bowleyana HOM05D005232 ORTHO05D006389 4.2e-114 417.2 939 37.8
Oeu014380.1 Olea europaea HOM05D005232 ORTHO05D006389 1.2e-113 415.6 847 41.7
Glyma.10G232300 Glycine max HOM05D005232 ORTHO05D006389 4.7e-113 413.7 744 42.5
THA.LOC104811969 Tarenaya hassleriana HOM05D005232 ORTHO05D006389 6.1e-113 413.3 546 51.6
TPR.G26976 Trifolium pratense HOM05D005232 ORTHO05D006389 1.4e-112 412.1 650 44.9
Ca_10736_v3 Cicer arietinum L. HOM05D005232 ORTHO05D006389 6.7e-112 409.8 836 39.5
CSS0011841 Camellia sinensis var. sinensis HOM05D005232 ORTHO05D006389 3.3e-111 407.5 956 38.2
Lalb_Chr02g0141181 Lupinus albus HOM05D005232 ORTHO05D006389 4.4e-111 407.1 1014 37.2
Lj5g0027810 Lotus japonicus HOM05D005232 ORTHO05D006389 1.3e-110 405.6 763 42.3
AUR62031391 Chenopodium quinoa HOM05D005232 ORTHO05D006389 3.7e-110 404.1 890 40.4
Glyma.20G161800 Glycine max HOM05D005232 ORTHO05D006389 6.3e-110 403.3 857 39.0
PSO170G2956 Papaver somniferum HOM05D005232 ORTHO05D006389 1.1e-109 402.5 936 38.0
Psat6g193720 Pisum sativum HOM05D005232 ORTHO05D006389 1.1e-109 402.5 774 40.6
Sc20g0006810 Simmondsia chinensis HOM05D005232 ORTHO05D006389 1.1e-109 402.5 685 43.4
RcHm_v2.0_Chr2g0116381 Rosa chinensis HOM05D005232 ORTHO05D006389 1.4e-109 402.1 994 36.9
Sabra12G0108400 Salix brachista HOM05D005232 ORTHO05D006389 3.1e-109 401.0 558 49.5
Oeu041197.1 Olea europaea HOM05D005232 ORTHO05D006389 5.3e-109 400.2 834 41.2
Cc02_g11150 Coffea canephora HOM05D005232 ORTHO05D006389 7.0e-109 399.8 288 72.2
Hund04775 Selenicereus undatus HOM05D005232 ORTHO05D006389 7.0e-109 399.8 911 41.2
Ah.07g201890 Amaranthus hybridus HOM05D005232 ORTHO05D006389 1.6e-108 398.7 971 40.1
Potri.012G144400 Populus trichocarpa HOM05D005232 ORTHO05D006389 1.6e-108 398.7 891 40.9
arahy.Tifrunner.gnm1.ann1.JBBQ4L Arachis hypogaea HOM05D005232 ORTHO05D006389 2.0e-108 398.3 758 41.4
Sed0005714 Sechium edule HOM05D005232 ORTHO05D006389 5.9e-108 396.7 1008 39.0
Medtr1g100210 Medicago truncatula HOM05D005232 ORTHO05D006389 2.9e-107 394.4 794 40.2
MSTRG.380 Avicennia marina HOM05D005232 ORTHO05D006389 1.9e-106 391.7 699 44.9
DCAR_006428 Daucus carota HOM05D005232 ORTHO05D006389 5.5e-106 390.2 530 49.4
TPR.G22241 Trifolium pratense HOM05D005232 ORTHO05D006389 1.6e-105 388.7 814 39.4
CARHR260960 Cardamine hirsuta HOM05D005232 ORTHO05D006389 2.3e-104 384.8 535 49.7
CAN.G694.95 Capsicum annuum HOM05D005232 ORTHO05D006389 8.8e-104 382.9 909 38.4
Os10g0447600 Oryza sativa ssp. japonica HOM05D005232 ORTHO05D006389 8.8e-104 382.9 605 46.3
SGA_v2.0_scaffold51G18697 Striga asiatica HOM05D005232 ORTHO05D006389 3.4e-103 380.9 867 39.2
ECA233G2984 Erigeron canadensis HOM05D005232 ORTHO05D006389 5.7e-103 380.2 543 47.0
Eucgr.C03422 Eucalyptus grandis HOM05D005232 ORTHO05D006389 7.5e-103 379.8 897 37.0
AL6G43680 Arabidopsis lyrata HOM05D005232 ORTHO05D006389 3.7e-102 377.5 525 50.1
MSTRG.8138 Avicennia marina HOM05D005232 ORTHO05D006389 4.8e-102 377.1 844 39.0
FvH4_1g22240 Fragaria vesca HOM05D005232 ORTHO05D006389 1.4e-101 375.6 902 38.6
FAN19G1688 Fragaria x ananassa HOM05D005232 ORTHO05D006389 1.8e-101 375.2 863 37.9
Solyc05g056220.3 Solanum lycopersicum HOM05D005232 ORTHO05D006389 9.1e-101 372.9 899 37.8
Hma1.2p1_2038F.1_g312080 Hydrangea macrophylla HOM05D005232 ORTHO05D006389 1.2e-100 372.5 407 58.5
Peaxi162Scf00858g00214 Petunia axillaris HOM05D005232 ORTHO05D006389 2.0e-100 371.7 888 37.2
Dinv28407 Davidia involucrata HOM05D005232 ORTHO05D006389 5.9e-100 370.2 233 78.1
arahy.Tifrunner.gnm1.ann1.IW4QJC Arachis hypogaea HOM05D005232 ORTHO05D006389 1.0e-99 369.4 329 62.6
Phvul.007G073300 Phaseolus vulgaris HOM05D005232 ORTHO05D006389 1.7e-99 368.6 883 37.4
VMungo0720G1404 Vigna mungo HOM05D005232 ORTHO05D006389 1.7e-99 368.6 903 37.4
Sopen05g034610 Solanum pennellii HOM05D005232 ORTHO05D006389 2.2e-99 368.2 929 36.3
FAN26G0882 Fragaria x ananassa HOM05D005232 ORTHO05D006389 8.5e-99 366.3 863 37.7
Rhsim09G0150800 Rhododendron simsii HOM05D005232 ORTHO05D006389 7.2e-98 363.2 545 46.6
FAN28G2294 Fragaria x ananassa HOM05D005232 ORTHO05D006389 2.7e-97 361.3 868 37.7
AT4G09980 Arabidopsis thaliana HOM05D005232 ORTHO05D006389 1.4e-96 359.0 732 41.0
Nitab4.5_0007148g0020 Nicotiana tabacum HOM05D005232 ORTHO05D006389 1.4e-96 359.0 932 36.2
Carub.0006s2852 Capsella rubella HOM05D005232 ORTHO05D006389 3.4e-95 354.4 816 38.0
PGSC0003DMG402023336 Solanum tuberosum HOM05D005232 ORTHO05D006389 3.4e-95 354.4 880 38.8
Os03g0147700 Oryza sativa ssp. japonica HOM05D005232 ORTHO05D006389 4.4e-95 354.0 504 48.0
PGSC0003DMG401023336 Solanum tuberosum HOM05D005232 ORTHO05D006389 4.4e-95 354.0 906 37.5
HanXRQChr08g0218691 Helianthus annuus HOM05D005232 ORTHO05D006389 3.7e-94 350.9 601 42.4
vmacro04863 Vaccinium macrocarpon HOM05D005232 ORTHO05D006389 1.4e-93 349.0 743 38.8
Sopen05g034600 Solanum pennellii HOM05D005232 ORTHO05D006389 1.8e-93 348.6 889 38.9
FAN23G0292 Fragaria x ananassa HOM05D005232 ORTHO05D006389 3.1e-93 347.8 993 36.2
Os01g0267100 Oryza sativa ssp. japonica HOM05D005232 ORTHO05D006389 5.4e-93 347.1 466 50.2
EL10Ac3g05588 Beta vulgaris HOM05D005232 ORTHO05D006389 1.3e-91 342.4 971 36.6
Zm00001eb003840 Zea mays HOM05D005232 ORTHO05D006389 2.9e-91 341.3 574 44.1
CAN.G694.94 Capsicum annuum HOM05D005232 ORTHO05D006389 5.0e-91 340.5 905 38.0
A09p28930 Brassica napus HOM05D005232 ORTHO05D006389 1.9e-90 338.6 520 48.7
BraA09t38457Z Brassica rapa HOM05D005232 ORTHO05D006389 2.5e-90 338.2 520 48.7
Thhalv10028402m.g Eutrema salsugineum HOM05D005232 ORTHO05D006389 2.5e-90 338.2 779 38.3
vmacro22314 Vaccinium macrocarpon HOM05D005232 ORTHO05D006389 3.3e-90 337.8 797 37.1
Lsat_1_v5_gn_8_20461 Lactuca sativa HOM05D005232 ORTHO05D006389 1.2e-89 335.9 292 63.0
HPP92_018498 Vanilla planifolia HOM05D005232 ORTHO05D006389 2.8e-89 334.7 218 74.3
Rhsim03G0189000 Rhododendron simsii HOM05D005232 ORTHO05D006389 6.1e-89 333.6 763 38.8
RhsimUnG0027300 Rhododendron simsii HOM05D005232 ORTHO05D006389 8.0e-89 333.2 763 38.8
Nitab4.5_0013274g0010 Nicotiana tabacum HOM05D005232 ORTHO05D006389 1.8e-88 332.0 920 35.8
Aa31LG9G12010 Aethionema arabicum HOM05D005232 ORTHO05D006389 4.4e-87 327.4 821 40.0
Cpa.g.sc42.153 Carica papaya HOM05D005232 ORTHO05D006389 5.7e-87 327.0 202 78.2
Sp6g07330 Schrenkiella parvula HOM05D005232 ORTHO05D006389 1.3e-86 325.9 821 40.0
BcaB01g01438 Brassica carinata HOM05D005232 ORTHO05D006389 1.1e-85 322.8 551 46.1
Lalb_Chr21g0305171 Lupinus albus HOM05D005232 ORTHO05D006389 5.4e-85 320.5 238 68.9
BcaC04g21005 Brassica carinata HOM05D005232 ORTHO05D006389 2.5e-82 311.6 525 46.3
C09p36730 Brassica napus HOM05D005232 ORTHO05D006389 2.5e-82 311.6 525 46.3
BolC9t56504H Brassica oleracea HOM05D005232 ORTHO05D006389 2.5e-82 311.6 525 46.3
AUR62021146 Chenopodium quinoa HOM05D005232 ORTHO05D006389 4.3e-82 310.8 1020 34.0
HanXRQChr12g0368711 Helianthus annuus HOM05D005232 ORTHO05D006389 6.8e-80 303.5 274 61.7
Hund11728 Selenicereus undatus HOM05D005232 ORTHO05D006389 5.8e-79 300.4 1017 35.2
Migut.F01728 Erythranthe guttata HOM05D005232 ORTHO05D006389 2.2e-78 298.5 886 34.9
Pp3c5_5900 Physcomitrium patens HOM05D005232 ORTHO05D006389 4.9e-78 297.4 645 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2345 Anthoceros agrestis HOM05D005232 ORTHO05D006389 3.0e-75 288.1 910 36.5
Pp3c6_26980 Physcomitrium patens HOM05D005232 ORTHO05D006389 3.6e-73 281.2 829 34.3
Mapoly0005s0162 Marchantia polymorpha HOM05D005232 ORTHO05D006389 9.5e-66 256.5 1172 34.4
Solyc05g056210.4 Solanum lycopersicum HOM05D005232 ORTHO05D006389 8.7e-51 206.8 824 35.0
Cre01.g050600 Chlamydomonas reinhardtii HOM05D005232 ORTHO05D006389 9.9e-47 193.4 140 62.9
SEGI_30084 Sequoiadendron giganteum HOM05D005232 ORTHO05D006389 1.1e-45 189.9 143 60.1
CBR_g46623 Chara braunii HOM05D005232 ORTHO05D006389 9.6e-42 176.8 120 65.8
unitig_736.g22333 Utricularia gibba HOM05D005232 ORTHO05D006389 3.1e-40 171.8 89 86.5
HPP92_018497 Vanilla planifolia HOM05D005232 ORTHO05D006389 6.7e-19 100.9 737 26.1
unitig_736.g22332 Utricularia gibba HOM05D005232 ORTHO05D006389 1.1e-08 67.0 529 27.0
Nitab4.5_0009827g0020 Nicotiana tabacum HOM05D005232 ORTHO05D006389 4.1e-08 65.1 42 71.4
Nitab4.5_0000582g0120 Nicotiana tabacum HOM05D005232 ORTHO05D006389 2.0e-07 62.8 32 84.4


User provided reference genes

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