Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.6e-38 160.6 75 100.0
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.5e-28 129.0 63 93.7
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 4.5e-25 117.5 63 81.0
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 1.0e-24 116.3 63 76.2
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 5.5e-23 110.5 63 73.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 9.4e-23 109.8 63 73.0
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.2e-22 109.4 59 79.7
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 3.6e-22 107.8 63 73.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.7e-22 107.5 63 71.4
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 4.7e-22 107.5 63 73.0
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 6.1e-22 107.1 63 74.6
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 8.0e-22 106.7 63 73.0
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 8.0e-22 106.7 59 76.3
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.4e-21 105.9 59 74.6
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.8e-21 105.5 63 71.4
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 2.3e-21 105.1 63 74.6
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 2.3e-21 105.1 63 71.4
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.3e-21 105.1 63 71.4
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 2.3e-21 105.1 63 69.8
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 2.3e-21 105.1 63 71.4
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 3.9e-21 104.4 63 69.8
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.9e-21 104.4 63 69.8
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.9e-21 104.4 63 69.8
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.9e-21 104.4 63 69.8
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 3.9e-21 104.4 63 69.8
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 5.2e-21 104.0 63 69.8
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 5.2e-21 104.0 63 69.8
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 5.2e-21 104.0 73 65.8
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 5.2e-21 104.0 63 73.0
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 5.2e-21 104.0 63 69.8
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 5.2e-21 104.0 63 71.4
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 6.7e-21 103.6 63 71.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 6.7e-21 103.6 63 69.8
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 6.7e-21 103.6 63 69.8
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.7e-21 103.6 63 68.3
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 8.8e-21 103.2 63 69.8
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.8e-21 103.2 63 69.8
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 8.8e-21 103.2 63 69.8
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 8.8e-21 103.2 63 69.8
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 8.8e-21 103.2 59 76.3
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 8.8e-21 103.2 63 69.8
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 8.8e-21 103.2 63 68.3
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 8.8e-21 103.2 63 66.7
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 8.8e-21 103.2 62 71.0
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.1e-20 102.8 63 69.8
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.1e-20 102.8 63 71.4
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.1e-20 102.8 63 68.3
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.1e-20 102.8 63 69.8
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.5e-20 102.4 63 66.7
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.5e-20 102.4 63 71.4
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.5e-20 102.4 63 68.3
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.0e-20 102.1 63 69.8
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 2.0e-20 102.1 63 68.3
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 2.6e-20 101.7 63 65.1
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 2.6e-20 101.7 63 66.7
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.6e-20 101.7 63 65.1
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.6e-20 101.7 63 65.1
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 2.6e-20 101.7 63 66.7
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 3.3e-20 101.3 63 66.7
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 3.3e-20 101.3 63 68.3
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 3.3e-20 101.3 59 72.9
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 3.3e-20 101.3 63 68.3
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 3.3e-20 101.3 63 68.3
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.7e-20 100.5 63 66.7
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 5.7e-20 100.5 63 66.7
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 5.7e-20 100.5 63 66.7
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 7.4e-20 100.1 63 69.8
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.4e-20 100.1 68 64.7
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 7.4e-20 100.1 63 69.8
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 9.7e-20 99.8 64 70.3
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 9.7e-20 99.8 63 68.3
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 9.7e-20 99.8 63 66.7
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.3e-19 99.4 63 66.7
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.3e-19 99.4 63 66.7
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.7e-19 99.0 58 72.4
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.7e-19 99.0 59 71.2
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.7e-19 99.0 59 69.5
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 2.2e-19 98.6 63 68.3
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.8e-19 98.2 59 69.5
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.8e-19 98.2 63 66.7
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 2.8e-19 98.2 64 67.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 2.8e-19 98.2 64 67.2
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 2.8e-19 98.2 59 69.5
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 3.7e-19 97.8 63 65.1
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.8e-19 97.4 58 74.1
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 4.8e-19 97.4 64 67.2
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 6.3e-19 97.1 65 69.2
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 6.3e-19 97.1 63 66.7
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 6.3e-19 97.1 63 63.5
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 6.3e-19 97.1 65 69.2
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.2e-19 96.7 63 61.9
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 8.2e-19 96.7 57 73.7
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 8.2e-19 96.7 65 69.2
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.1e-18 96.3 60 68.3
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.4e-18 95.9 65 67.7
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.4e-18 95.9 65 69.2
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.4e-18 95.9 65 69.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.4e-18 95.9 65 69.2
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.8e-18 95.5 58 70.7
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.4e-18 95.1 63 61.9
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 2.4e-18 95.1 65 67.7
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.4e-18 95.1 64 65.6
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 3.1e-18 94.7 60 68.3
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 3.1e-18 94.7 65 66.2
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 3.1e-18 94.7 64 62.5
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.1e-18 94.7 62 66.1
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 7.0e-18 93.6 63 60.3
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 7.0e-18 93.6 60 68.3
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 7.0e-18 93.6 60 68.3
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.2e-17 92.8 64 62.5
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.6e-17 91.7 61 68.9
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 5.9e-17 90.5 65 66.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.9e-17 90.5 65 66.2
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.3e-16 89.4 64 62.5
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.3e-16 89.4 58 65.5
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.3e-16 89.4 65 66.2
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.7e-16 89.0 65 64.6
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 2.9e-16 88.2 65 63.1
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.9e-16 88.2 64 60.9
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.9e-16 88.2 66 60.6
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 3.8e-16 87.8 65 63.1
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 3.8e-16 87.8 59 61.0
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 3.8e-16 87.8 63 58.7
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 5.0e-16 87.4 61 65.6
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 5.0e-16 87.4 65 61.5
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 5.0e-16 87.4 51 74.5
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 6.5e-16 87.0 65 63.1
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 8.5e-16 86.7 65 61.5
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 8.5e-16 86.7 66 62.1
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 8.5e-16 86.7 66 62.1
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 8.5e-16 86.7 65 61.5
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.5e-15 85.9 62 61.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.5e-15 85.9 62 61.3
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.5e-15 85.9 65 60.0
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.5e-15 85.9 65 61.5
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.5e-15 85.9 66 60.6
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 1.9e-15 85.5 66 60.6
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 1.9e-15 85.5 66 60.6
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 2.5e-15 85.1 65 60.0
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.5e-15 85.1 65 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 3.2e-15 84.7 63 60.3
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 3.2e-15 84.7 72 52.8
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 3.2e-15 84.7 64 62.5
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 4.2e-15 84.3 59 59.3
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.2e-15 84.3 57 63.2
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 5.5e-15 84.0 53 66.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 7.2e-15 83.6 63 57.1
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 9.4e-15 83.2 49 67.3
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 9.4e-15 83.2 49 67.3
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.6e-14 82.4 59 59.3
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.6e-14 82.4 59 59.3
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.7e-14 81.6 57 63.2
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 4.7e-14 80.9 64 54.7
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.8e-13 79.0 63 60.3
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 4.0e-13 77.8 68 52.9
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 5.2e-13 77.4 49 69.4
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 6.8e-13 77.0 57 57.9
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.6e-12 75.1 50 66.0
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.4e-12 74.7 55 63.6
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.5e-12 73.6 57 59.6
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 1.7e-11 72.4 43 65.1
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 2.8e-11 71.6 43 62.8
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.1e-10 68.2 59 54.2
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.2e-09 66.2 39 69.2
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 4.5e-09 64.3 54 55.6
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.7e-08 62.4 50 52.0
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 5.0e-08 60.8 58 50.0
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 4.2e-07 57.8 54 48.1


User provided reference genes

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