Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.0e-94 350.1 181 100.0
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 2.3e-30 136.3 80 87.5
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 6.8e-19 98.2 79 62.0
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 1.2e-18 97.4 67 71.6
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.2e-18 97.4 75 65.3
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 1.5e-18 97.1 83 57.8
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 2.0e-18 96.7 89 56.2
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 2.0e-18 96.7 89 56.2
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 2.6e-18 96.3 152 41.4
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 3.4e-18 95.9 81 61.7
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 3.4e-18 95.9 67 68.7
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 4.4e-18 95.5 169 41.4
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 5.8e-18 95.1 103 47.6
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 5.8e-18 95.1 67 67.2
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 5.8e-18 95.1 83 61.4
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.8e-18 95.1 153 43.1
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 5.8e-18 95.1 64 68.8
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 7.5e-18 94.7 69 66.7
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 9.9e-18 94.4 105 50.5
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 9.9e-18 94.4 73 63.0
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.7e-17 93.6 68 67.6
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.7e-17 93.6 81 55.6
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 1.7e-17 93.6 111 47.7
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 1.7e-17 93.6 78 61.5
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.7e-17 93.6 70 65.7
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.7e-17 93.6 75 61.3
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 2.2e-17 93.2 112 45.5
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 2.2e-17 93.2 70 64.3
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.9e-17 92.8 153 43.1
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.9e-17 92.8 70 65.7
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 2.9e-17 92.8 73 61.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 2.9e-17 92.8 150 44.0
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 3.7e-17 92.4 70 64.3
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 3.7e-17 92.4 71 64.8
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 3.7e-17 92.4 73 61.6
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 4.9e-17 92.0 92 52.2
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 4.9e-17 92.0 83 57.8
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.9e-17 92.0 76 59.2
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 6.4e-17 91.7 153 41.2
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 6.4e-17 91.7 67 65.7
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.4e-17 91.7 68 66.2
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 6.4e-17 91.7 68 66.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 6.4e-17 91.7 70 64.3
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 6.4e-17 91.7 67 65.7
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 8.3e-17 91.3 70 64.3
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 8.3e-17 91.3 152 40.8
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.1e-16 90.9 104 49.0
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.1e-16 90.9 78 59.0
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.1e-16 90.9 69 63.8
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.1e-16 90.9 79 54.4
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.1e-16 90.9 67 64.2
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 1.1e-16 90.9 148 42.6
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.1e-16 90.9 111 46.8
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.1e-16 90.9 79 59.5
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.1e-16 90.9 70 65.7
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 1.1e-16 90.9 89 52.8
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.4e-16 90.5 67 65.7
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.9e-16 90.1 84 56.0
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 1.9e-16 90.1 115 46.1
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.9e-16 90.1 92 52.2
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.9e-16 90.1 92 52.2
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 1.9e-16 90.1 68 63.2
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.9e-16 90.1 82 52.4
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.9e-16 90.1 67 64.2
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.9e-16 90.1 111 46.8
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.4e-16 89.7 104 48.1
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.4e-16 89.7 70 61.4
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.4e-16 89.7 150 41.3
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.4e-16 89.7 68 64.7
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.4e-16 89.7 70 64.3
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.2e-16 89.4 104 48.1
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 3.2e-16 89.4 152 40.8
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 3.2e-16 89.4 73 61.6
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.2e-16 89.4 100 48.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.2e-16 89.4 73 60.3
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 4.1e-16 89.0 105 47.6
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 4.1e-16 89.0 68 64.7
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 5.4e-16 88.6 153 41.2
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.4e-16 88.6 104 47.1
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 5.4e-16 88.6 66 63.6
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 5.4e-16 88.6 88 52.3
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 5.4e-16 88.6 69 60.9
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 5.4e-16 88.6 67 62.7
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 5.4e-16 88.6 150 41.3
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 7.1e-16 88.2 78 57.7
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 7.1e-16 88.2 84 53.6
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 7.1e-16 88.2 64 67.2
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 7.1e-16 88.2 77 58.4
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 7.1e-16 88.2 111 43.2
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 9.2e-16 87.8 153 41.2
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 9.2e-16 87.8 73 56.2
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 9.2e-16 87.8 68 63.2
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 1.2e-15 87.4 153 40.5
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.2e-15 87.4 150 40.0
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.2e-15 87.4 152 40.8
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.2e-15 87.4 150 41.3
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.1e-15 86.7 79 55.7
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.1e-15 86.7 79 55.7
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 2.1e-15 86.7 73 60.3
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 2.1e-15 86.7 153 41.2
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 2.7e-15 86.3 73 53.4
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 2.7e-15 86.3 155 36.8
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.7e-15 86.3 111 45.0
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.7e-15 86.3 111 45.0
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 3.5e-15 85.9 153 40.5
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 3.5e-15 85.9 111 45.9
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 3.5e-15 85.9 68 61.8
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 4.6e-15 85.5 153 38.6
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.6e-15 85.5 151 41.7
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 6.0e-15 85.1 146 41.1
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 6.0e-15 85.1 144 41.7
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 7.8e-15 84.7 73 56.2
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 7.8e-15 84.7 154 37.7
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.3e-14 84.0 70 57.1
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.7e-14 83.6 86 52.3
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.3e-14 83.2 86 52.3
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.3e-14 83.2 86 52.3
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 2.3e-14 83.2 74 55.4
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 3.0e-14 82.8 70 57.1
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 5.1e-14 82.0 150 37.3
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 8.6e-14 81.3 86 46.5
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.1e-13 80.9 81 53.1
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.9e-13 80.1 75 53.3
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 1.6e-12 77.0 72 48.6
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.8e-12 76.3 92 52.2
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.7e-12 75.5 136 39.7
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 6.2e-12 75.1 74 51.4
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.8e-11 73.6 153 39.2
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 2.4e-11 73.2 72 48.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 8.9e-11 71.2 86 48.8
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 2.0e-10 70.1 104 43.3
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 4.9e-09 65.5 106 37.7
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 6.4e-09 65.1 48 62.5
SEGI_17569 Sequoiadendron giganteum HOM05D001575 ORTHO05D001536 1.2e-07 60.8 83 34.9
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 6.0e-07 58.5 59 44.1
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.3e-06 56.6 41 61.0


User provided reference genes

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