Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.1e-178 629.8 318 100.0
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 3.8e-81 305.8 224 66.1
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 2.5e-77 293.1 244 59.8
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.5e-77 293.1 211 65.4
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 2.5e-77 293.1 211 65.4
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 2.5e-77 293.1 219 63.9
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.8e-76 289.7 211 64.0
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 3.7e-76 289.3 220 62.7
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 6.3e-76 288.5 218 63.3
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 8.2e-76 288.1 219 62.1
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.8e-75 287.0 223 60.5
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.8e-75 287.0 223 61.4
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.4e-75 286.6 230 59.1
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 2.4e-75 286.6 219 61.6
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 3.1e-75 286.2 225 60.4
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 4.1e-75 285.8 220 61.8
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 6.9e-75 285.0 218 61.5
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 6.9e-75 285.0 220 62.7
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 9.0e-75 284.6 221 61.1
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 9.0e-75 284.6 218 61.9
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 9.0e-75 284.6 218 61.9
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.5e-74 283.9 213 62.4
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.0e-74 283.5 211 64.0
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.6e-74 283.1 211 64.9
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 5.9e-74 282.0 212 63.2
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 5.9e-74 282.0 220 61.4
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 7.7e-74 281.6 298 49.7
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.0e-73 281.2 218 60.6
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 1.0e-73 281.2 234 59.4
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.3e-73 280.8 219 58.4
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.3e-73 280.8 219 58.4
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.7e-73 280.4 217 61.8
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.7e-73 280.4 218 59.6
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.9e-73 279.6 219 60.3
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 2.9e-73 279.6 220 60.9
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 3.8e-73 279.3 217 63.1
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 3.8e-73 279.3 214 61.2
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 3.8e-73 279.3 217 61.3
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 3.8e-73 279.3 242 57.4
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 6.5e-73 278.5 218 59.6
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.5e-73 278.5 219 58.0
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 6.5e-73 278.5 232 59.9
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.1e-72 277.7 219 60.3
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.1e-72 277.7 218 59.6
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.9e-72 276.9 211 62.1
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.5e-72 276.6 220 59.5
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.2e-72 276.2 220 60.0
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 3.2e-72 276.2 219 58.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.2e-72 276.2 224 60.7
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 4.2e-72 275.8 220 60.9
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 4.2e-72 275.8 223 60.1
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.2e-72 275.8 220 57.3
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 5.5e-72 275.4 217 61.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 7.2e-72 275.0 217 59.9
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 9.4e-72 274.6 217 60.4
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 1.6e-71 273.9 215 59.1
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.7e-71 273.1 211 62.1
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 3.6e-71 272.7 232 58.6
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 4.6e-71 272.3 218 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 6.1e-71 271.9 218 60.6
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.0e-70 271.2 217 59.9
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.0e-70 271.2 216 59.7
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.8e-70 270.4 213 60.6
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.3e-70 270.0 265 51.7
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 3.0e-70 269.6 219 58.9
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 5.1e-70 268.9 213 60.6
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 5.1e-70 268.9 229 58.5
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 5.1e-70 268.9 213 60.1
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 8.8e-70 268.1 214 59.8
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 8.8e-70 268.1 213 59.6
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 8.8e-70 268.1 218 58.7
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 1.1e-69 267.7 220 57.7
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 2.0e-69 266.9 229 59.4
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.3e-69 266.2 233 55.8
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 4.3e-69 265.8 222 58.1
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 9.7e-69 264.6 218 59.2
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 9.7e-69 264.6 218 59.2
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 9.7e-69 264.6 218 59.2
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.3e-68 264.2 218 58.3
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.7e-68 262.7 238 55.0
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.8e-68 262.3 233 55.8
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.8e-68 262.3 233 55.8
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 8.2e-68 261.5 213 59.2
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 8.2e-68 261.5 221 57.5
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.1e-67 261.2 238 55.0
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.1e-67 261.2 214 57.9
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.4e-67 260.8 211 59.2
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.7e-66 255.0 184 65.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 1.7e-65 253.8 230 54.8
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 3.8e-65 252.7 241 54.4
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 1.9e-64 250.4 220 56.8
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 3.9e-62 242.7 207 57.5
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 2.6e-61 240.0 211 56.9
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 5.9e-58 228.8 217 51.2
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 2.2e-57 226.9 220 51.8
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 3.2e-56 223.0 190 54.7
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.3e-52 211.1 216 50.0
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.1e-51 208.0 182 54.9
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 3.6e-47 193.0 158 57.6
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 1.0e-41 174.9 137 60.6
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.1e-40 171.4 145 56.6
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 3.2e-40 169.9 145 55.9
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.5e-37 161.0 144 51.4
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 7.5e-37 158.7 159 53.5
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.7e-36 157.5 143 53.1
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.1e-32 144.8 102 68.6
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.8e-30 137.5 121 52.1
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.0e-30 136.3 117 55.6
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-29 134.8 156 46.2
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.6e-26 124.4 86 66.3
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-23 114.8 75 74.7
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-23 114.8 75 74.7
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 1.7e-17 94.4 231 27.7
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 5.6e-16 89.4 92 46.7
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.2e-13 81.6 82 48.8
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 6.0e-10 69.3 253 24.5
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.7e-09 67.8 228 25.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.3e-09 67.4 279 22.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.1e-09 66.2 246 24.0
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.6e-09 65.5 232 24.6
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 8.6e-09 65.5 254 22.4
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.9e-08 64.3 228 24.1
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.9e-08 64.3 219 24.2
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.5e-08 63.9 219 24.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.3e-08 63.5 113 30.1
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.3e-08 63.5 223 23.8
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 4.3e-08 63.2 219 25.1
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 7.3e-08 62.4 224 24.1
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 7.3e-08 62.4 219 24.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.5e-08 62.0 240 25.0
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.2e-07 61.6 225 24.9
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.6e-07 61.2 225 23.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.6e-07 61.2 219 23.3
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.1e-07 60.8 222 23.9
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 2.8e-07 60.5 214 22.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 3.6e-07 60.1 225 24.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 3.6e-07 60.1 227 23.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 3.6e-07 60.1 224 24.1
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 3.6e-07 60.1 94 33.0
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.6e-07 60.1 231 23.8
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.7e-07 59.7 214 22.9
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 4.7e-07 59.7 215 25.1
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 6.2e-07 59.3 225 23.6
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 6.2e-07 59.3 215 23.7
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 6.2e-07 59.3 220 23.6
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 8.1e-07 58.9 224 25.9
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.1e-06 58.5 223 22.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-06 58.5 233 21.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.1e-06 58.5 171 25.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.1e-06 58.5 223 24.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.1e-06 58.5 237 22.8
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.4e-06 58.2 171 24.6
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.4e-06 58.2 224 24.6
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.4e-06 58.2 234 23.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.8e-06 57.8 220 23.6
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.8e-06 57.8 220 23.6
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.8e-06 57.8 225 23.1
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.8e-06 57.8 237 21.9
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.8e-06 57.8 222 24.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.3e-06 57.4 214 21.5
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 3.1e-06 57.0 233 21.9
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.0e-06 56.6 211 25.1
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 5.2e-06 56.2 77 32.5
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 5.2e-06 56.2 228 22.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 5.2e-06 56.2 234 24.8
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 6.8e-06 55.8 180 23.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 6.8e-06 55.8 225 21.8
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 6.8e-06 55.8 215 23.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 8.9e-06 55.5 234 22.6
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 8.9e-06 55.5 219 23.7


User provided reference genes

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