Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 0.0e+00 2124.7 1155 100.0
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 4.0e-197 693.0 1116 38.9
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 4.9e-187 659.4 1114 38.2
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.2e-179 634.0 1108 38.1
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 5.4e-178 629.4 1140 35.4
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 3.4e-172 610.1 1107 35.1
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 3.5e-161 573.5 1082 34.3
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 1.3e-160 571.6 1075 34.3
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 5.1e-160 569.7 1094 35.2
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 6.7e-160 569.3 1285 35.8
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 7.4e-159 565.8 1084 34.5
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 8.2e-158 562.4 1094 34.7
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.4e-157 560.8 1086 34.5
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 4.5e-156 556.6 1094 34.8
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 5.8e-156 556.2 1100 34.6
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.3e-155 555.1 1087 34.2
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 2.9e-155 553.9 1097 33.3
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 5.5e-154 549.7 1084 34.3
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 5.1e-152 543.1 1085 35.2
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 6.7e-152 542.7 1084 33.9
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 8.7e-152 542.3 1074 34.8
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 3.3e-151 540.4 1096 33.9
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 4.3e-151 540.0 1075 34.2
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 5.7e-151 539.7 1078 33.5
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.7e-151 539.7 1077 34.4
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 2.8e-150 537.3 1086 33.4
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 8.2e-150 535.8 1101 33.2
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 3.1e-149 533.9 1099 33.5
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 5.3e-149 533.1 1081 34.2
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 2.0e-148 531.2 1068 33.7
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 5.9e-148 529.6 1083 34.3
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.0e-147 528.9 1097 33.3
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.5e-146 524.2 1083 34.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.2e-146 523.9 1081 33.6
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 7.4e-143 512.7 1085 32.2
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 4.8e-142 510.0 1037 32.4
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.0e-136 492.3 1075 33.1
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 7.2e-130 469.5 1077 30.5
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 7.2e-130 469.5 992 31.4
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.4e-128 465.3 457 50.8
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.8e-125 454.9 464 51.5
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 5.0e-123 446.8 1062 30.8
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.2e-122 443.0 468 47.9
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 7.2e-122 443.0 901 33.0
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.2e-121 442.2 461 48.6
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 3.6e-121 440.7 453 50.6
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 8.0e-121 439.5 470 48.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 4.4e-119 433.7 453 48.6
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.2e-118 431.4 453 48.3
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.2e-116 425.6 459 46.4
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.5e-116 424.1 447 48.8
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 1.0e-115 422.5 452 48.0
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.7e-115 421.8 451 47.9
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 5.0e-115 420.2 447 47.7
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.1e-114 419.1 454 47.4
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.5e-114 418.7 451 48.3
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.2e-114 417.2 453 47.9
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 5.5e-114 416.8 452 48.0
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 3.6e-113 414.1 453 46.8
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-111 408.7 453 46.1
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 3.4e-111 407.5 468 44.9
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 5.7e-111 406.8 447 47.4
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.7e-110 405.2 449 47.0
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 8.3e-110 402.9 447 46.3
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.1e-109 402.5 458 44.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.1e-109 402.5 452 44.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.8e-109 401.7 451 45.0
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 7.0e-109 399.8 455 45.9
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.2e-108 399.1 456 45.6
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 1.6e-108 398.7 458 44.5
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 5.9e-108 396.7 468 44.7
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.3e-107 395.6 461 44.9
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 3.8e-107 394.0 451 45.5
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.8e-107 394.0 451 45.5
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 9.5e-106 389.4 453 45.0
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.2e-105 389.0 451 44.3
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 6.1e-105 386.7 333 56.2
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 9.8e-103 379.4 447 45.4
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.2e-100 372.5 307 55.4
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 4.5e-100 370.5 460 43.3
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 5.9e-100 370.2 450 44.7
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.3e-99 369.0 450 44.4
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.9e-98 365.2 453 43.3
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 2.1e-97 361.7 415 47.0
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 4.7e-97 360.5 450 43.8
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 6.1e-97 360.1 460 42.8
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 6.1e-97 360.1 830 31.3
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.0e-96 359.4 344 50.9
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.4e-96 359.0 485 40.2
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.1e-96 357.8 470 41.9
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 5.2e-96 357.1 469 41.8
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 6.8e-96 356.7 450 43.3
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.2e-95 355.9 449 41.4
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 4.4e-95 354.0 359 50.4
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 9.8e-95 352.8 456 42.8
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 9.8e-95 352.8 479 41.1
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.6e-92 345.5 453 42.2
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 5.0e-91 340.5 447 42.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 5.0e-91 340.5 364 47.5
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 7.1e-85 320.1 368 44.6
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 2.3e-83 315.1 456 41.0
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 2.3e-83 315.1 456 41.0
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 4.7e-81 307.4 446 39.7
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 8.9e-80 303.1 345 46.7
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.9e-74 285.4 451 35.7
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.1e-72 279.6 200 62.0
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 6.8e-72 276.9 434 36.9
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 5.4e-69 267.3 251 47.8
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 9.6e-66 256.5 247 49.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 3.1e-64 251.5 354 42.1
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 6.0e-60 237.3 352 37.8
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.9e-58 232.3 167 59.3
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.4e-45 189.5 354 34.5
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 3.4e-39 168.3 739 22.9
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 4.2e-37 161.4 117 59.0
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 5.9e-31 141.0 377 30.5
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.6e-28 131.7 242 35.5
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 3.7e-25 121.7 219 36.1
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 5.9e-23 114.4 169 40.2
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.1e-21 110.2 181 38.7
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 7.9e-20 104.0 178 37.6
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.1e-19 101.3 62 69.4
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.2e-12 80.1 78 52.6
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 3.7e-09 68.6 100 37.0
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 4.8e-09 68.2 119 36.1
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.2e-07 63.5 57 47.4
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.3e-06 60.1 148 27.0


User provided reference genes

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