Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26495 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 1.3e-66 256.5 159 100.0
SEGI_12155 Sequoiadendron giganteum HOM05D000607 ORTHO05D003284 4.9e-21 105.1 80 62.5
SEGI_24689 Sequoiadendron giganteum HOM05D004004 ORTHO05D386969 1.8e-15 86.7 77 53.2
SEGI_28010 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 1.7e-13 80.1 64 60.9
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 8.7e-10 67.8 74 39.2
Psat2g157520 Pisum sativum HOM05D004004 ORTHO05D003284 1.9e-09 66.6 73 42.5
FvH4_1g12761 Fragaria vesca HOM05D004004 ORTHO05D003284 2.5e-09 66.2 73 39.7
FAN28G2460 Fragaria x ananassa HOM05D004004 ORTHO05D003284 3.3e-09 65.9 73 38.4
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 3.3e-09 65.9 70 37.1
Actinidia38530 Actinidia chinensis HOM05D004004 ORTHO05D003284 4.3e-09 65.5 71 38.0
RcHm_v2.0_Chr2g0100871 Rosa chinensis HOM05D004004 ORTHO05D003284 4.3e-09 65.5 73 39.7
TWI12G0300 Tripterygium wilfordii HOM05D000607 ORTHO05D003284 4.3e-09 65.5 67 37.3
FAN23G2735 Fragaria x ananassa HOM05D004004 ORTHO05D003284 5.6e-09 65.1 73 38.4
CSS0023371 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 7.3e-09 64.7 73 39.7
RcHm_v2.0_Chr6g0301541 Rosa chinensis HOM05D004004 ORTHO05D003284 7.3e-09 64.7 74 40.5
TPR.G2394 Trifolium pratense HOM05D004004 ORTHO05D003284 9.6e-09 64.3 73 38.4
Zm00001eb432750 Zea mays HOM05D004004 ORTHO05D003284 9.6e-09 64.3 74 36.5
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.3e-08 63.9 88 36.4
FAN26G1971 Fragaria x ananassa HOM05D008813 ORTHO05D003284 1.3e-08 63.9 77 37.7
Os04g0661100 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 1.3e-08 63.9 71 39.4
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 1.6e-08 63.5 68 45.6
CANSAT01G1672 Cannabis sativa HOM05D004004 ORTHO05D003284 2.1e-08 63.2 73 37.0
Manes.05G156200 Manihot esculenta HOM05D000607 ORTHO05D003284 2.8e-08 62.8 67 40.3
Potri.006G079400 Populus trichocarpa HOM05D004004 ORTHO05D003284 2.8e-08 62.8 67 37.3
Prupe.1G375500 Prunus persica HOM05D004004 ORTHO05D003284 2.8e-08 62.8 71 40.8
SEGI_04888 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 2.8e-08 62.8 68 39.7
TAR381G0545 Trochodendron aralioides HOM05D000607 ORTHO05D003284 2.8e-08 62.8 74 37.8
Aqoxy4G00091 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 4.8e-08 62.0 70 41.4
Potri.005G230300 Populus trichocarpa HOM05D004004 ORTHO05D003284 4.8e-08 62.0 71 39.4
SEGI_19145 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 4.8e-08 62.0 72 34.7
TWI53G0327 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 4.8e-08 62.0 73 35.6
MD08G1026800 Malus domestica HOM05D004004 ORTHO05D003284 6.2e-08 61.6 71 40.8
Potri.002G032800 Populus trichocarpa HOM05D004004 ORTHO05D003284 6.2e-08 61.6 71 40.8
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 6.2e-08 61.6 70 34.3
SEGI_40269 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 6.2e-08 61.6 71 35.2
Actinidia22522 Actinidia chinensis HOM05D004004 ORTHO05D003284 8.1e-08 61.2 71 40.8
CiPaw.08G059800 Carya illinoinensis HOM05D004004 ORTHO05D003284 8.1e-08 61.2 70 40.0
HanXRQChr14g0440621 Helianthus annuus HOM05D004004 ORTHO05D003284 1.1e-07 60.8 75 38.7
Lsat_1_v5_gn_4_117321 Lactuca sativa HOM05D000607 ORTHO05D003284 1.1e-07 60.8 67 35.8
Potri.005G120200 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.1e-07 60.8 73 35.6
Potri.007G021200 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.1e-07 60.8 73 35.6
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.1e-07 60.8 67 34.3
PGR119G0532 Punica granatum HOM05D004004 ORTHO05D003284 1.1e-07 60.8 74 33.8
Atru.chr13.424 Acer truncatum HOM05D004004 ORTHO05D003284 1.4e-07 60.5 71 38.0
Ciclev10002820m.g Citrus clementina HOM05D004004 ORTHO05D003284 1.4e-07 60.5 67 40.3
MD15G1023400 Malus domestica HOM05D004004 ORTHO05D003284 1.4e-07 60.5 71 39.4
Medtr5g020960 Medicago truncatula HOM05D004004 ORTHO05D003284 1.4e-07 60.5 73 37.0
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 1.8e-07 60.1 73 32.9
Lj2g0016762 Lotus japonicus HOM05D004004 ORTHO05D003284 1.8e-07 60.1 73 37.0
MBI18_g28925_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 1.8e-07 60.1 70 32.9
MD15G1256400 Malus domestica HOM05D004004 ORTHO05D003284 1.8e-07 60.1 73 34.2
Rhsim06G0029400 Rhododendron simsii HOM05D004004 ORTHO05D003284 1.8e-07 60.1 71 38.0
Aqoxy6G01169 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 2.4e-07 59.7 71 32.4
CANSAT25G0030 Cannabis sativa HOM05D004004 ORTHO05D003284 2.4e-07 59.7 71 38.0
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.4e-07 59.7 69 36.2
Haze_03875 Corylus avellana HOM05D004004 ORTHO05D003284 2.4e-07 59.7 73 34.2
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 2.4e-07 59.7 67 40.3
Haze_22541 Corylus avellana HOM05D004004 ORTHO05D003284 2.4e-07 59.7 67 40.3
MBI18_g28922_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.4e-07 59.7 70 32.9
PGR031G0975 Punica granatum HOM05D004004 ORTHO05D003284 2.4e-07 59.7 67 41.8
CSS0049012 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 3.1e-07 59.3 74 33.8
Dinv42932 Davidia involucrata HOM05D004004 ORTHO05D003284 3.1e-07 59.3 68 30.9
Dinv43168 Davidia involucrata HOM05D004004 ORTHO05D003284 3.1e-07 59.3 68 30.9
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 3.1e-07 59.3 71 33.8
MBI16_g26156_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 3.1e-07 59.3 71 36.6
Nn1g04908 Nelumbo nucifera HOM05D000607 ORTHO05D003284 3.1e-07 59.3 72 36.1
Oeu000178.1 Olea europaea HOM05D004004 ORTHO05D003284 3.1e-07 59.3 72 37.5
PGR031G3823 Punica granatum HOM05D004004 ORTHO05D003284 3.1e-07 59.3 69 39.1
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.0e-07 58.9 74 33.8
Dinv42931 Davidia involucrata HOM05D004004 ORTHO05D003284 4.0e-07 58.9 65 30.8
Dinv43169 Davidia involucrata HOM05D004004 ORTHO05D003284 4.0e-07 58.9 65 30.8
Phvul.002G033800 Phaseolus vulgaris HOM05D004004 ORTHO05D003284 4.0e-07 58.9 73 35.6
Sp3g04810 Schrenkiella parvula HOM05D008255 ORTHO05D003284 4.0e-07 58.9 67 34.3
Cfa006895 Carpinus fangiana HOM05D004004 ORTHO05D003284 5.3e-07 58.5 73 34.2
Haze_03857 Corylus avellana HOM05D004004 ORTHO05D003284 5.3e-07 58.5 73 32.9
Glyma.11G071500 Glycine max HOM05D004004 ORTHO05D003284 5.3e-07 58.5 71 36.6
Nn1g09210 Nelumbo nucifera HOM05D004004 ORTHO05D003284 5.3e-07 58.5 72 36.1
PSO541G0719 Papaver somniferum HOM05D004004 ORTHO05D003284 5.3e-07 58.5 74 33.8
CiPaw.07G049200 Carya illinoinensis HOM05D004004 ORTHO05D003284 6.9e-07 58.2 73 34.2
ECA238G0774 Erigeron canadensis HOM05D004004 ORTHO05D003284 6.9e-07 58.2 73 38.4
HanXRQChr14g0440601 Helianthus annuus HOM05D004004 ORTHO05D003284 6.9e-07 58.2 73 37.0
DCAR_006946 Daucus carota HOM05D000607 ORTHO05D000518 9.0e-07 57.8 66 37.9
Eucgr.F01872 Eucalyptus grandis HOM05D004004 ORTHO05D003284 9.0e-07 57.8 67 37.3
HanXRQChr09g0250531 Helianthus annuus HOM05D004004 ORTHO05D003284 9.0e-07 57.8 72 37.5
QL04p055236 Quercus lobata HOM05D000607 ORTHO05D000518 9.0e-07 57.8 66 39.4
QL06p035435 Quercus lobata HOM05D004004 ORTHO05D003284 9.0e-07 57.8 73 32.9
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 9.0e-07 57.8 67 37.3
Ah.13g069190 Amaranthus hybridus HOM05D000607 ORTHO05D000518 1.2e-06 57.4 67 37.3
CANSAT80G0904 Cannabis sativa HOM05D004004 ORTHO05D003284 1.2e-06 57.4 69 34.8
Carub.0006s2427 Capsella rubella HOM05D008255 ORTHO05D003284 1.2e-06 57.4 72 31.9
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 1.2e-06 57.4 69 31.9
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 1.2e-06 57.4 69 33.3
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.2e-06 57.4 69 31.9
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.2e-06 57.4 69 31.9
HanXRQChr09g0250511 Helianthus annuus HOM05D004004 ORTHO05D003284 1.2e-06 57.4 73 34.2
GSVIVG01036224001 Vitis vinifera HOM05D004004 ORTHO05D003284 1.2e-06 57.4 69 31.9
Cpa.g.sc6.165 Carica papaya HOM05D004004 ORTHO05D003284 1.5e-06 57.0 71 32.4
Manes.13G076069 Manihot esculenta HOM05D004004 ORTHO05D003284 1.5e-06 57.0 61 34.4
Prupe.7G158500 Prunus persica HOM05D004004 ORTHO05D003284 1.5e-06 57.0 73 32.9
TAR381G1189 Trochodendron aralioides HOM05D004004 ORTHO05D003284 2.0e-06 56.6 86 31.4
BraA06t26610Z Brassica rapa HOM05D008255 ORTHO05D011943 2.6e-06 56.2 68 30.9
Dinv40018 Davidia involucrata HOM05D004004 ORTHO05D003284 2.6e-06 56.2 77 32.5
A06p36870 Brassica napus HOM05D008255 ORTHO05D003284 3.4e-06 55.8 81 29.6
CiPaw.08G139700 Carya illinoinensis HOM05D004004 ORTHO05D003284 3.4e-06 55.8 73 32.9
FvH4_5g03140 Fragaria vesca HOM05D000607 ORTHO05D000518 3.4e-06 55.8 66 39.4
Lsat_1_v5_gn_2_77660 Lactuca sativa HOM05D004004 ORTHO05D003284 3.4e-06 55.8 71 38.0
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 3.4e-06 55.8 73 34.2
SEGI_25089 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 3.4e-06 55.8 70 32.9
Sopen02g029610 Solanum pennellii HOM05D004004 ORTHO05D003284 3.4e-06 55.8 73 32.9
VMungo1215G3070 Vigna mungo HOM05D004004 ORTHO05D003284 3.4e-06 55.8 71 35.2
CARHR186920 Cardamine hirsuta HOM05D008255 ORTHO05D003284 4.5e-06 55.5 67 31.3
FAN04G1058 Fragaria x ananassa HOM05D000607 ORTHO05D000518 4.5e-06 55.5 66 39.4
FAN13G0586 Fragaria x ananassa HOM05D000607 ORTHO05D000518 4.5e-06 55.5 66 39.4
Gohir.D08G019400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.5e-06 55.5 71 36.6
Psat7g030320 Pisum sativum HOM05D000607 ORTHO05D000518 4.5e-06 55.5 66 42.4
RcHm_v2.0_Chr7g0196641 Rosa chinensis HOM05D000607 ORTHO05D000518 4.5e-06 55.5 66 39.4
PSO675G0710 Papaver somniferum HOM05D004004 ORTHO05D003284 5.8e-06 55.1 70 32.9
Sabra07G0018100 Salix brachista HOM05D004004 ORTHO05D003284 5.8e-06 55.1 73 31.5
Hund16675 Selenicereus undatus HOM05D000607 ORTHO05D000518 5.8e-06 55.1 66 33.3
GSVIVG01026961001 Vitis vinifera HOM05D000607 ORTHO05D000518 5.8e-06 55.1 66 37.9
Aqoxy6G01170 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 7.6e-06 54.7 76 31.6
Ciclev10022806m.g Citrus clementina HOM05D000607 ORTHO05D000518 7.6e-06 54.7 66 36.4
Thhalv10005163m.g Eutrema salsugineum HOM05D008255 ORTHO05D003284 7.6e-06 54.7 68 27.9
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 7.6e-06 54.7 67 35.8
Manes.02G097000 Manihot esculenta HOM05D004004 ORTHO05D003284 7.6e-06 54.7 70 32.9
TPR.G26971 Trifolium pratense HOM05D000607 ORTHO05D000518 7.6e-06 54.7 66 42.4
Atru.chr9.2122 Acer truncatum HOM05D000607 ORTHO05D000518 9.9e-06 54.3 66 33.3
Haze_15557 Corylus avellana HOM05D000607 ORTHO05D000518 9.9e-06 54.3 66 37.9
Oeu036592.1 Olea europaea HOM05D000607 ORTHO05D000518 9.9e-06 54.3 66 34.8
Phvul.002G292900 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 9.9e-06 54.3 66 42.4
Psat2g157480 Pisum sativum HOM05D010322 ORTHO05D012006 9.9e-06 54.3 63 34.9
TWI12G0953 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 9.9e-06 54.3 52 38.5


User provided reference genes

Program Settings