Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 1.1e-62 243.0 116 100.0
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 5.0e-15 84.7 91 44.0
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 6.8e-12 74.3 92 39.1
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 4.4e-11 71.6 92 38.0
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 5.7e-11 71.2 92 35.9
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 1.3e-10 70.1 96 36.5
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 1.3e-10 70.1 96 35.4
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 1.3e-10 70.1 87 35.6
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 1.7e-10 69.7 89 36.0
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 2.8e-10 68.9 91 35.2
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 4.8e-10 68.2 103 34.0
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 4.8e-10 68.2 91 34.1
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 4.8e-10 68.2 90 37.8
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 4.8e-10 68.2 85 37.6
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 6.3e-10 67.8 90 36.7
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 6.3e-10 67.8 96 35.4
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 1.1e-09 67.0 83 34.9
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.1e-09 67.0 103 33.0
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 1.1e-09 67.0 83 37.3
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 1.4e-09 66.6 94 38.3
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 1.4e-09 66.6 91 34.1
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.8e-09 66.2 91 34.1
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 2.4e-09 65.9 82 39.0
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 2.4e-09 65.9 91 33.0
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 2.4e-09 65.9 88 36.4
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 3.1e-09 65.5 82 39.0
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 4.1e-09 65.1 91 34.1
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 4.1e-09 65.1 92 34.8
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 4.1e-09 65.1 91 34.1
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 7.0e-09 64.3 120 33.3
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 7.0e-09 64.3 82 37.8
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 7.0e-09 64.3 91 34.1
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 9.1e-09 63.9 91 34.1
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 1.6e-08 63.2 105 33.3
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.6e-08 63.2 93 36.6
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.0e-08 62.8 91 33.0
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 2.7e-08 62.4 92 32.6
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 2.7e-08 62.4 91 34.1
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 2.7e-08 62.4 93 32.3
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 2.7e-08 62.4 93 35.5
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 2.7e-08 62.4 93 35.5
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 4.5e-08 61.6 92 31.5
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 4.5e-08 61.6 92 31.5
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 4.5e-08 61.6 85 34.1
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 4.5e-08 61.6 92 34.8
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 7.7e-08 60.8 82 34.1
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 1.0e-07 60.5 92 32.6
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 1.0e-07 60.5 93 36.6
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 1.7e-07 59.7 82 35.4
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.7e-07 59.7 92 33.7
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 2.3e-07 59.3 82 35.4
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 2.9e-07 58.9 91 28.6
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 3.8e-07 58.5 67 38.8
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 3.8e-07 58.5 94 31.9
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 5.0e-07 58.2 92 29.3
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 5.0e-07 58.2 85 32.9
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 5.0e-07 58.2 92 31.5
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 6.6e-07 57.8 87 29.9
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 6.6e-07 57.8 92 30.4
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 6.6e-07 57.8 82 29.3
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 8.6e-07 57.4 82 32.9
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 1.5e-06 56.6 82 30.5
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.5e-06 56.6 97 30.9
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.5e-06 56.6 94 30.9
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 1.9e-06 56.2 82 30.5
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.9e-06 56.2 83 32.5
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.9e-06 56.2 89 31.5
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.9e-06 56.2 89 31.5
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 1.9e-06 56.2 91 31.9
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 2.5e-06 55.8 82 30.5
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 2.5e-06 55.8 86 32.6
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.5e-06 55.8 85 31.8
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 3.3e-06 55.5 94 29.8
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 4.2e-06 55.1 80 35.0
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 5.5e-06 54.7 82 30.5
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 5.5e-06 54.7 89 30.3
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 7.2e-06 54.3 82 31.7
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 7.2e-06 54.3 82 31.7
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 9.5e-06 53.9 82 30.5
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 9.5e-06 53.9 84 29.8


User provided reference genes

Program Settings