Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.8e-90 335.9 171 100.0
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 6.2e-30 134.8 79 78.5
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.4e-29 132.9 80 76.2
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 2.4e-29 132.9 80 76.2
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 6.9e-29 131.3 80 77.5
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 9.0e-29 131.0 105 64.8
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 9.0e-29 131.0 79 75.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.2e-28 130.6 79 74.7
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.5e-28 130.2 82 72.0
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.5e-28 130.2 84 70.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.4e-28 129.0 81 74.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.4e-28 129.0 83 72.3
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.4e-28 129.0 79 74.7
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 4.5e-28 128.6 79 73.4
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 4.5e-28 128.6 79 74.7
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 4.5e-28 128.6 83 69.9
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 7.6e-28 127.9 83 71.1
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 7.6e-28 127.9 82 70.7
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 7.6e-28 127.9 83 69.9
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 9.9e-28 127.5 79 73.4
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 9.9e-28 127.5 79 72.2
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 9.9e-28 127.5 79 73.4
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 9.9e-28 127.5 82 72.0
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 9.9e-28 127.5 79 75.9
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.3e-27 127.1 79 72.2
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.7e-27 126.7 83 69.9
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.7e-27 126.7 79 77.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.2e-27 126.3 79 70.9
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 2.2e-27 126.3 79 70.9
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.2e-27 126.3 80 68.8
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.2e-27 126.3 79 72.2
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 2.9e-27 125.9 79 72.2
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.9e-27 125.9 79 70.9
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 3.8e-27 125.6 80 68.8
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 3.8e-27 125.6 79 75.9
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 4.9e-27 125.2 79 72.2
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 6.4e-27 124.8 79 75.9
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 6.4e-27 124.8 97 62.9
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 8.4e-27 124.4 79 73.4
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 8.4e-27 124.4 77 72.7
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 8.4e-27 124.4 79 73.4
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.1e-26 124.0 84 67.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.1e-26 124.0 79 69.6
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.1e-26 124.0 79 69.6
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 1.4e-26 123.6 76 73.7
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.4e-26 123.6 79 69.6
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.9e-26 123.2 79 68.4
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 2.4e-26 122.9 76 73.7
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.4e-26 122.9 82 67.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 2.4e-26 122.9 82 67.1
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 3.2e-26 122.5 79 69.6
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 3.2e-26 122.5 79 69.6
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 4.2e-26 122.1 81 69.1
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 4.2e-26 122.1 79 74.7
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 4.2e-26 122.1 76 73.7
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.2e-26 122.1 82 67.1
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 5.4e-26 121.7 80 68.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.4e-26 121.7 77 70.1
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 5.4e-26 121.7 79 69.6
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 7.1e-26 121.3 84 66.7
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 7.1e-26 121.3 84 66.7
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 7.1e-26 121.3 84 66.7
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 7.1e-26 121.3 84 66.7
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 7.1e-26 121.3 84 66.7
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 7.1e-26 121.3 81 71.6
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 7.1e-26 121.3 81 71.6
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 7.1e-26 121.3 76 72.4
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 7.1e-26 121.3 84 67.9
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 7.1e-26 121.3 80 68.8
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 7.1e-26 121.3 79 70.9
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 9.3e-26 120.9 84 66.7
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 9.3e-26 120.9 76 71.1
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 9.3e-26 120.9 76 71.1
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 9.3e-26 120.9 84 66.7
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 9.3e-26 120.9 84 65.5
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.2e-25 120.6 84 65.5
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.2e-25 120.6 84 65.5
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.2e-25 120.6 84 65.5
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.2e-25 120.6 79 72.2
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.2e-25 120.6 77 70.1
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.2e-25 120.6 82 69.5
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.2e-25 120.6 82 69.5
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.2e-25 120.6 105 55.2
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.6e-25 120.2 78 71.8
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.6e-25 120.2 85 65.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.6e-25 120.2 79 69.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.6e-25 120.2 79 72.2
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.1e-25 119.8 85 65.9
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 2.1e-25 119.8 85 65.9
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.1e-25 119.8 79 70.9
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 2.7e-25 119.4 79 65.8
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 2.7e-25 119.4 76 69.7
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.7e-25 119.4 79 70.9
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 2.7e-25 119.4 82 70.7
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.7e-25 119.4 79 67.1
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.5e-25 119.0 79 70.9
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 3.5e-25 119.0 76 68.4
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 4.6e-25 118.6 79 70.9
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.6e-25 118.6 83 68.7
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 4.6e-25 118.6 76 69.7
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.0e-25 118.2 84 65.5
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 6.0e-25 118.2 84 65.5
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 6.0e-25 118.2 84 64.3
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 6.0e-25 118.2 79 69.6
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 7.9e-25 117.9 76 69.7
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 7.9e-25 117.9 77 71.4
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.0e-24 117.5 82 70.7
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.0e-24 117.5 76 69.7
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.3e-24 117.1 80 67.5
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.3e-24 117.1 79 68.4
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.3e-24 117.1 80 67.5
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.8e-24 116.7 76 69.7
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.8e-24 116.7 76 69.7
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.8e-24 116.7 76 69.7
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.8e-24 116.7 80 67.5
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 3.0e-24 115.9 76 69.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.0e-24 115.9 82 68.3
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 3.9e-24 115.5 80 67.5
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.9e-24 115.5 79 67.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.9e-24 115.5 81 65.4
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 5.1e-24 115.2 82 65.9
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 6.7e-24 114.8 79 70.9
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 6.7e-24 114.8 76 69.7
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 8.7e-24 114.4 76 68.4
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.1e-23 114.0 76 68.4
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.5e-23 113.6 80 65.0
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.9e-23 113.2 80 66.2
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.9e-23 113.2 80 66.2
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 9.6e-23 110.9 79 63.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.1e-22 109.8 79 64.6
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.1e-22 109.8 80 63.8
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.8e-22 109.4 99 54.5
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 6.2e-22 108.2 79 63.3
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 6.2e-22 108.2 79 63.3
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 6.2e-22 108.2 80 66.2
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 8.1e-22 107.8 84 63.1
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.4e-21 107.1 122 48.4
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.8e-21 106.7 72 69.4
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 4.0e-21 105.5 100 56.0
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 3.2e-18 95.9 78 61.5
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 9.3e-18 94.4 78 60.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 6.0e-17 91.7 58 75.9
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-16 90.5 101 53.5
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.9e-15 86.7 75 57.3
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.3e-11 73.9 83 44.6
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 6.5e-11 71.6 47 66.0
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 4.2e-10 68.9 49 61.2
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 3.5e-09 65.9 51 56.9
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 3.5e-09 65.9 51 56.9


User provided reference genes

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