Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 3.0e-106 388.7 213 100.0
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 5.5e-60 235.0 191 65.4
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.3e-58 229.6 167 65.9
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.9e-58 228.8 167 69.5
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.3e-57 225.7 167 67.1
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.2e-56 223.0 166 65.7
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.8e-56 222.6 167 66.5
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.8e-56 222.6 183 62.8
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.7e-56 222.2 185 62.2
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.8e-56 221.9 183 61.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.2e-56 221.1 167 66.5
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 8.2e-56 221.1 170 66.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.1e-55 220.7 174 62.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.1e-55 220.7 167 66.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.1e-55 220.7 174 63.2
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.4e-55 220.3 167 66.5
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.8e-55 219.9 168 64.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.4e-55 219.5 168 64.9
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.1e-55 218.8 165 64.2
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 4.1e-55 218.8 169 61.5
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 5.3e-55 218.4 170 63.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.3e-55 218.4 167 64.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.2e-54 217.2 167 65.3
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.2e-54 217.2 172 64.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.6e-54 216.9 164 64.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.6e-54 216.9 167 65.3
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.6e-54 216.9 164 65.9
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 2.6e-54 216.1 173 63.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.6e-54 216.1 187 58.3
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 3.5e-54 215.7 167 66.5
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.5e-54 215.3 167 62.9
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.5e-54 215.3 167 62.9
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.5e-54 215.3 164 65.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.9e-54 214.9 167 64.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 5.9e-54 214.9 173 62.4
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.7e-54 214.5 173 63.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.0e-53 214.2 192 55.7
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.0e-53 214.2 167 64.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.3e-53 213.8 177 62.1
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.7e-53 213.4 171 64.3
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.2e-53 213.0 168 63.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.2e-53 213.0 179 60.3
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 2.9e-53 212.6 168 63.7
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.8e-53 212.2 166 62.7
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.8e-53 212.2 164 66.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 6.5e-53 211.5 164 61.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.5e-53 211.5 167 61.1
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.5e-53 211.1 179 59.8
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 8.5e-53 211.1 167 62.3
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 8.5e-53 211.1 167 62.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.1e-52 210.7 166 63.9
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.1e-52 210.7 182 59.3
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.5e-52 210.3 173 60.7
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.9e-52 209.9 164 62.2
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.5e-52 209.5 166 61.4
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.5e-52 209.5 168 61.3
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.5e-52 209.5 184 60.3
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.5e-52 208.4 172 59.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 9.4e-52 207.6 167 61.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.2e-51 207.2 166 63.3
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.6e-51 206.8 164 61.6
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.6e-51 206.8 170 61.2
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.7e-51 206.1 167 62.9
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.6e-51 205.7 167 62.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 3.6e-51 205.7 166 60.2
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 4.7e-51 205.3 167 61.7
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 6.1e-51 204.9 174 60.9
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 6.1e-51 204.9 174 60.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.0e-51 204.5 160 64.4
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 8.0e-51 204.5 174 60.9
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 8.0e-51 204.5 174 60.9
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 8.0e-51 204.5 164 61.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 8.0e-51 204.5 171 62.6
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 8.0e-51 204.5 167 61.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 8.0e-51 204.5 167 59.3
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 8.0e-51 204.5 167 62.3
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 8.0e-51 204.5 164 61.0
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 8.0e-51 204.5 164 64.6
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.0e-50 204.1 153 66.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-50 204.1 178 59.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.4e-50 203.8 167 59.9
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.8e-50 203.4 180 57.8
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.3e-50 203.0 167 62.3
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.3e-50 203.0 167 61.7
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 3.0e-50 202.6 182 57.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 3.0e-50 202.6 182 57.7
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.0e-50 202.6 184 58.7
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.0e-50 202.6 167 61.1
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 3.0e-50 202.6 167 61.7
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.0e-50 202.6 167 62.3
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.0e-50 202.2 167 63.5
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 5.2e-50 201.8 168 60.7
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.7e-50 201.4 164 61.0
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 8.8e-50 201.1 167 60.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.0e-49 199.9 158 63.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.0e-49 199.9 164 59.8
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.6e-49 199.5 164 59.8
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.4e-49 198.7 150 64.0
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.3e-48 197.2 165 61.8
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.3e-48 197.2 170 58.2
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.8e-48 196.1 158 62.7
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.8e-48 196.1 163 62.0
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.7e-48 195.7 165 60.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.8e-48 195.3 166 59.6
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.8e-48 195.3 168 60.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.2e-48 194.5 164 58.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-47 194.1 194 55.7
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.8e-47 193.4 192 54.7
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.4e-47 193.0 170 58.2
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.4e-47 193.0 170 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 7.7e-46 188.0 167 58.1
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.7e-46 188.0 150 62.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.3e-45 187.2 151 60.3
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.9e-45 186.0 169 56.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.8e-45 185.7 210 50.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.8e-45 185.7 153 61.4
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.8e-45 185.7 153 61.4
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.8e-45 185.7 157 58.0
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 6.5e-45 184.9 185 55.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.5e-45 184.5 190 53.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.2e-44 182.2 186 53.2
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.8e-42 174.5 142 59.2
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 5.7e-41 171.8 165 53.9
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.7e-40 170.2 184 53.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 4.8e-40 168.7 165 53.9
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.2e-38 164.1 161 55.9
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.5e-38 162.2 132 64.4
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 7.2e-36 154.8 174 50.6
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 9.4e-36 154.5 168 48.8
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 9.4e-36 154.5 124 61.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.8e-34 150.2 175 48.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 5.2e-34 148.7 196 45.4
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.2e-34 148.7 164 45.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.5e-30 136.0 139 50.4
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 8.0e-27 124.8 104 62.5
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.3e-26 123.2 83 68.7
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.0e-26 122.9 84 64.3
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 4.0e-26 122.5 96 60.4
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-25 120.9 86 67.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.6e-25 119.8 99 64.6
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 4.4e-25 119.0 99 61.6
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 9.2e-23 111.3 95 61.1
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 5.9e-22 108.6 92 59.8
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.3e-21 107.5 73 67.1
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.6e-17 93.2 80 60.0
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.4e-17 92.8 135 36.3
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.7e-16 89.4 158 37.3
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.2e-15 84.7 77 55.8
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-14 84.0 101 49.5
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 4.3e-12 75.9 73 52.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.1e-10 69.7 76 46.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-07 61.2 56 57.1
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.2e-07 59.7 47 57.4
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 2.1e-06 57.0 41 73.2
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.8e-06 55.1 42 59.5


User provided reference genes

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