Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 1.8e-37 159.1 102 100.0
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 3.3e-18 95.1 83 65.1
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 3.3e-18 95.1 83 65.1
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 7.3e-18 94.0 79 60.8
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 9.5e-18 93.6 81 60.5
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 1.6e-17 92.8 78 61.5
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 1.6e-17 92.8 78 61.5
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 1.6e-17 92.8 78 61.5
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 1.6e-17 92.8 78 62.8
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 2.1e-17 92.4 81 59.3
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 3.6e-17 91.7 79 62.0
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 6.1e-17 90.9 78 61.5
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 8.0e-17 90.5 78 61.5
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 1.8e-16 89.4 84 58.3
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 1.8e-16 89.4 78 61.5
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.8e-16 89.4 78 60.3
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.8e-16 89.4 78 61.5
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 1.8e-16 89.4 78 61.5
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.8e-16 89.4 81 59.3
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 2.3e-16 89.0 80 58.8
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 2.3e-16 89.0 78 61.5
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 2.3e-16 89.0 78 61.5
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 2.3e-16 89.0 78 61.5
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 2.3e-16 89.0 78 61.5
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 2.3e-16 89.0 78 61.5
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 3.0e-16 88.6 82 59.8
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 3.0e-16 88.6 82 56.1
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 3.0e-16 88.6 78 59.0
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 4.0e-16 88.2 81 58.0
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 4.0e-16 88.2 81 59.3
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 4.0e-16 88.2 81 59.3
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 5.2e-16 87.8 78 59.0
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 5.2e-16 87.8 78 60.3
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 5.2e-16 87.8 78 59.0
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 6.8e-16 87.4 78 61.5
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 6.8e-16 87.4 81 56.8
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 6.8e-16 87.4 81 59.3
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.8e-16 87.4 78 59.0
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 6.8e-16 87.4 81 55.6
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 6.8e-16 87.4 79 55.7
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 6.8e-16 87.4 79 57.0
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 57.7
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 57.7
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 59.0
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 59.0
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 59.0
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 59.0
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 8.9e-16 87.0 78 55.1
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 8.9e-16 87.0 82 54.9
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.2e-15 86.7 78 59.0
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.2e-15 86.7 78 59.0
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.2e-15 86.7 78 59.0
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 1.2e-15 86.7 81 55.6
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 1.2e-15 86.7 82 56.1
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 1.5e-15 86.3 78 57.7
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.5e-15 86.3 81 58.0
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.5e-15 86.3 85 55.3
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.5e-15 86.3 78 59.0
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 2.0e-15 85.9 79 57.0
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 2.0e-15 85.9 78 57.7
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 2.6e-15 85.5 81 59.3
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 2.6e-15 85.5 78 57.7
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.6e-15 85.5 81 54.3
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.6e-15 85.5 81 54.3
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 3.4e-15 85.1 78 57.7
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 3.4e-15 85.1 81 55.6
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 4.4e-15 84.7 78 59.0
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 4.4e-15 84.7 78 55.1
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 5.8e-15 84.3 82 57.3
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 5.8e-15 84.3 77 58.4
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 5.8e-15 84.3 81 56.8
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 5.8e-15 84.3 79 55.7
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 5.8e-15 84.3 76 56.6
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 5.8e-15 84.3 78 57.7
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 7.5e-15 84.0 78 59.0
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 7.5e-15 84.0 78 56.4
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 9.8e-15 83.6 78 55.1
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 9.8e-15 83.6 78 55.1
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 1.3e-14 83.2 82 56.1
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 1.3e-14 83.2 81 54.3
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.3e-14 83.2 77 55.8
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 1.3e-14 83.2 78 55.1
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.7e-14 82.8 78 53.8
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 2.2e-14 82.4 78 57.7
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 2.9e-14 82.0 81 56.8
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 2.9e-14 82.0 81 58.0
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 2.9e-14 82.0 78 57.7
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 3.7e-14 81.6 78 55.1
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 3.7e-14 81.6 78 53.8
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 4.9e-14 81.3 81 54.3
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.1e-13 80.1 77 54.5
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.1e-13 80.1 77 54.5
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 1.8e-13 79.3 82 47.6
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 2.4e-13 79.0 90 52.2
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 2.4e-13 79.0 82 53.7
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 4.1e-13 78.2 78 55.1
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 5.4e-13 77.8 77 53.2
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 5.4e-13 77.8 102 47.1
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 1.2e-12 76.6 81 49.4
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 1.6e-12 76.3 68 60.3
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 1.6e-12 76.3 68 60.3
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.7e-11 72.8 80 48.8
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 3.9e-11 71.6 96 44.8
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.1e-10 70.1 69 52.2
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 1.5e-10 69.7 80 47.5
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 4.3e-10 68.2 83 45.8
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 3.1e-08 62.0 71 47.9
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 5.2e-08 61.2 73 45.2
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 6.8e-08 60.8 65 55.4
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 8.9e-08 60.5 76 40.8
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.2e-07 60.1 78 46.2
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 5.8e-07 57.8 54 55.6
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 9.8e-07 57.0 61 52.5
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 9.8e-07 57.0 63 52.4


User provided reference genes

Program Settings