Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 1.2e-292 1009.2 566 100.0
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.2e-23 114.8 250 34.8
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 3.9e-20 104.0 188 38.8
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.5e-19 101.3 272 35.3
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 3.3e-19 100.9 206 38.3
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 5.6e-19 100.1 180 39.4
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.6e-18 97.4 188 36.2
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 8.1e-18 96.3 209 38.3
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 1.1e-17 95.9 206 36.9
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.4e-17 95.5 177 39.5
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.8e-17 95.1 156 41.0
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.1e-17 94.4 176 37.5
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 4.0e-17 94.0 265 33.6
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 9.0e-17 92.8 136 43.4
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.2e-16 92.4 273 33.7
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.5e-16 92.0 165 38.2
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.5e-16 92.0 184 35.3
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.5e-16 92.0 193 36.3
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 2.0e-16 91.7 251 31.5
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.6e-16 91.3 135 43.7
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.4e-16 90.9 180 36.7
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 5.8e-16 90.1 273 31.5
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.8e-16 90.1 177 38.4
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 7.6e-16 89.7 177 36.2
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.6e-16 89.7 179 37.4
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 9.9e-16 89.4 270 31.1
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 9.9e-16 89.4 231 32.9
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 1.3e-15 89.0 196 35.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.7e-15 88.6 133 42.1
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.7e-15 88.6 184 35.3
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.7e-15 88.6 178 37.1
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.7e-15 88.6 178 37.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.2e-15 88.2 124 44.4
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.9e-15 87.8 135 40.0
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.8e-15 87.4 267 31.1
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.8e-15 87.4 182 37.9
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 4.9e-15 87.0 192 35.9
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 4.9e-15 87.0 126 44.4
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 4.9e-15 87.0 209 35.4
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 6.4e-15 86.7 177 35.6
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 6.4e-15 86.7 226 34.1
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 6.4e-15 86.7 180 34.4
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 6.4e-15 86.7 280 31.1
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 8.4e-15 86.3 265 34.0
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 8.4e-15 86.3 170 37.1
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.1e-14 85.9 200 32.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.1e-14 85.9 250 34.8
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.1e-14 85.9 231 33.3
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.9e-14 85.1 264 34.1
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.9e-14 85.1 282 30.5
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 2.4e-14 84.7 206 35.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 2.4e-14 84.7 192 35.4
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.4e-14 84.7 266 30.1
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 3.2e-14 84.3 166 37.3
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 3.2e-14 84.3 236 33.9
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 4.2e-14 84.0 226 33.6
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 5.4e-14 83.6 233 32.2
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 5.4e-14 83.6 252 30.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.4e-14 83.6 177 33.9
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 7.1e-14 83.2 255 29.8
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 7.1e-14 83.2 257 33.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 7.1e-14 83.2 257 33.9
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 7.1e-14 83.2 264 33.7
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 7.1e-14 83.2 238 32.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 9.3e-14 82.8 207 30.9
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 9.3e-14 82.8 186 33.9
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 9.3e-14 82.8 197 34.5
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 9.3e-14 82.8 197 34.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.2e-13 82.4 235 30.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.2e-13 82.4 231 31.2
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.6e-13 82.0 210 35.2
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.6e-13 82.0 193 35.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.1e-13 81.6 137 40.1
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.1e-13 81.6 138 39.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.7e-13 81.3 187 33.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 2.7e-13 81.3 170 35.3
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.7e-13 81.3 136 39.0
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 2.7e-13 81.3 260 30.8
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 3.5e-13 80.9 138 40.6
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.5e-13 80.9 138 40.6
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 4.6e-13 80.5 269 30.1
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 6.0e-13 80.1 181 34.3
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 6.0e-13 80.1 257 29.6
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 7.9e-13 79.7 177 35.6
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 7.9e-13 79.7 232 31.9
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-12 79.0 324 28.4
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.3e-12 78.2 139 38.8
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.0e-12 77.8 135 37.8
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 3.0e-12 77.8 132 36.4
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 3.9e-12 77.4 127 42.5
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 5.1e-12 77.0 231 32.0
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 5.1e-12 77.0 289 30.8
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 6.7e-12 76.6 136 36.0
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 6.7e-12 76.6 272 29.0
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.1e-11 75.9 224 33.9
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.5e-11 75.5 215 34.0
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.5e-11 75.5 270 29.6
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 3.3e-11 74.3 220 30.9
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.4e-11 73.2 215 31.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.3e-10 72.4 259 27.8
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.6e-10 72.0 192 32.3
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.1e-10 71.6 246 31.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.1e-10 71.6 263 29.3
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.7e-10 70.9 198 29.8
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.7e-10 70.9 187 31.0
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.8e-10 70.5 216 29.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.8e-10 70.5 192 29.7
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 8.1e-10 69.7 225 30.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.4e-09 68.2 227 28.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.4e-09 68.2 327 26.6
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 3.1e-09 67.8 127 35.4
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.0e-09 67.4 248 29.0
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.0e-09 67.4 248 29.0
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 9.0e-09 66.2 205 33.7
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 9.0e-09 66.2 133 34.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.2e-08 65.9 301 27.9
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 5.8e-08 63.5 247 27.5
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 7.6e-08 63.2 301 28.2
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.7e-07 62.0 272 26.5
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 2.2e-07 61.6 143 35.0
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 3.8e-07 60.8 189 32.3
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.1e-06 59.3 264 26.9
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.9e-06 58.5 182 33.5


User provided reference genes

Program Settings