Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26002 Sequoiadendron giganteum HOM05D006380 ORTHO05D026655 0.0e+00 1243.0 632 100.0
Pp3c20_16450 Physcomitrium patens HOM05D005887 ORTHO05D026655 2.5e-52 211.1 380 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3312 Anthoceros agrestis HOM05D006380 ORTHO05D026655 1.4e-39 168.7 383 33.2
CBR_g59393 Chara braunii HOM05D006380 ORTHO05D026655 5.0e-16 90.5 251 30.3
Atru.chr5.2291 Acer truncatum HOM05D006380 ORTHO05D008400 2.3e-13 81.6 367 22.6
Os03g0729000 Oryza sativa ssp. japonica HOM05D006380 ORTHO05D008400 3.0e-13 81.3 369 23.6
Aa31LG7G2670 Aethionema arabicum HOM05D006380 ORTHO05D008400 5.1e-13 80.5 420 22.6
Hund00420 Selenicereus undatus HOM05D006380 ORTHO05D008400 5.1e-13 80.5 412 23.3
Manes.10G087000 Manihot esculenta HOM05D006380 ORTHO05D008400 6.7e-13 80.1 414 23.4
Zm00001eb056010 Zea mays HOM05D006380 ORTHO05D008400 8.8e-13 79.7 369 23.3
EL10Ac9g22178 Beta vulgaris HOM05D006380 ORTHO05D008400 2.0e-12 78.6 407 24.6
Actinidia02441 Actinidia chinensis HOM05D006380 ORTHO05D008400 3.3e-12 77.8 377 22.5
Ciclev10028052m.g Citrus clementina HOM05D006380 ORTHO05D008400 4.4e-12 77.4 366 23.0
arahy.Tifrunner.gnm1.ann1.XY5X2R Arachis hypogaea HOM05D006380 ORTHO05D008400 5.7e-12 77.0 412 23.5
Potri.001G289700 Populus trichocarpa HOM05D006380 ORTHO05D008400 5.7e-12 77.0 407 23.1
arahy.Tifrunner.gnm1.ann1.3DIB68 Arachis hypogaea HOM05D006380 ORTHO05D008400 7.4e-12 76.6 412 23.5
CARHR018470 Cardamine hirsuta HOM05D006380 ORTHO05D008400 7.4e-12 76.6 393 23.9
PSO782G2056 Papaver somniferum HOM05D006380 ORTHO05D008400 7.4e-12 76.6 396 22.2
PSO782G3094 Papaver somniferum HOM05D006380 ORTHO05D008400 7.4e-12 76.6 396 22.2
HPP92_020044 Vanilla planifolia HOM05D006380 ORTHO05D008400 7.4e-12 76.6 369 24.1
A06p13930 Brassica napus HOM05D006380 ORTHO05D008400 9.7e-12 76.3 401 24.4
BraA06t24534Z Brassica rapa HOM05D006380 ORTHO05D008400 9.7e-12 76.3 401 24.4
Thhalv10007206m.g Eutrema salsugineum HOM05D006380 ORTHO05D008400 9.7e-12 76.3 367 22.6
FAN24G2317 Fragaria x ananassa HOM05D006380 ORTHO05D008400 9.7e-12 76.3 413 22.8
PSO782G2024 Papaver somniferum HOM05D006380 ORTHO05D008400 9.7e-12 76.3 396 22.2
PSO782G3183 Papaver somniferum HOM05D006380 ORTHO05D008400 9.7e-12 76.3 396 22.2
PSO782G4930 Papaver somniferum HOM05D006380 ORTHO05D008400 9.7e-12 76.3 396 22.2
Peaxi162Scf00016g03133 Petunia axillaris HOM05D006380 ORTHO05D008400 9.7e-12 76.3 366 22.7
PGR042G2482 Punica granatum HOM05D006380 ORTHO05D008400 9.7e-12 76.3 403 23.3
PGSC0003DMG400025737 Solanum tuberosum HOM05D006380 ORTHO05D008400 9.7e-12 76.3 366 23.5
C05p16250 Brassica napus HOM05D006380 ORTHO05D008400 1.3e-11 75.9 402 24.9
AT1G17870 Arabidopsis thaliana HOM05D006380 ORTHO05D008400 1.7e-11 75.5 373 22.8
BcaB07g34011 Brassica carinata HOM05D006380 ORTHO05D008400 1.7e-11 75.5 401 24.4
PSO478G2487 Papaver somniferum HOM05D006380 ORTHO05D008400 1.7e-11 75.5 418 22.5
Sopen01g049130 Solanum pennellii HOM05D006380 ORTHO05D008400 1.7e-11 75.5 358 22.9
Haze_10300 Corylus avellana HOM05D006380 ORTHO05D008400 2.2e-11 75.1 373 22.5
FAN20G2135 Fragaria x ananassa HOM05D006380 ORTHO05D008400 2.2e-11 75.1 413 22.0
Medtr4g010130 Medicago truncatula HOM05D006380 ORTHO05D008400 2.2e-11 75.1 375 23.5
AL1G30230 Arabidopsis lyrata HOM05D006380 ORTHO05D008400 2.8e-11 74.7 366 23.0
CiPaw.05G020800 Carya illinoinensis HOM05D006380 ORTHO05D008400 2.8e-11 74.7 376 21.8
AUR62030866 Chenopodium quinoa HOM05D006380 ORTHO05D008400 2.8e-11 74.7 414 24.2
COL.COLO4_32484 Corchorus olitorius HOM05D006380 ORTHO05D008400 2.8e-11 74.7 377 23.6
Migut.B00463 Erythranthe guttata HOM05D006380 ORTHO05D008400 2.8e-11 74.7 376 22.6
FvH4_2g03320 Fragaria vesca HOM05D006380 ORTHO05D008400 2.8e-11 74.7 413 22.0
HanXRQChr09g0250961 Helianthus annuus HOM05D006380 ORTHO05D008400 2.8e-11 74.7 407 21.9
MBI16_g31132_MAGBIO Magnolia biondii HOM05D006380 ORTHO05D008400 2.8e-11 74.7 375 22.1
TPR.G38635 Trifolium pratense HOM05D006380 ORTHO05D008400 2.8e-11 74.7 367 23.2
vmacro01945 Vaccinium macrocarpon HOM05D006380 ORTHO05D008400 2.8e-11 74.7 375 22.4
CANSAT25G1826 Cannabis sativa HOM05D006380 ORTHO05D008400 3.7e-11 74.3 366 22.7
Gohir.A01G009420 Gossypium hirsutum HOM05D006380 ORTHO05D008400 3.7e-11 74.3 368 23.1
RhsimUnG0122900 Rhododendron simsii HOM05D006380 ORTHO05D008400 3.7e-11 74.3 373 22.0
Solyc01g106820.3 Solanum lycopersicum HOM05D006380 ORTHO05D008400 3.7e-11 74.3 358 22.9
AUR62027024 Chenopodium quinoa HOM05D006380 ORTHO05D008400 4.8e-11 73.9 414 24.2
Cc02_g20060 Coffea canephora HOM05D006380 ORTHO05D008400 4.8e-11 73.9 393 22.9
TWI59G1228 Tripterygium wilfordii HOM05D006380 ORTHO05D008400 4.8e-11 73.9 377 23.3
BolC5t30327H Brassica oleracea HOM05D006380 ORTHO05D008400 6.3e-11 73.6 402 24.6
CAN.G606.71 Capsicum annuum HOM05D006380 ORTHO05D008400 6.3e-11 73.6 358 22.6
Lsat_1_v5_gn_9_113340 Lactuca sativa HOM05D006380 ORTHO05D008400 6.3e-11 73.6 373 22.5
FAN15G1102 Fragaria x ananassa HOM05D006380 ORTHO05D008400 8.2e-11 73.2 413 22.0
RhsimUnG0040900 Rhododendron simsii HOM05D006380 ORTHO05D008400 8.2e-11 73.2 374 22.2
RcHm_v2.0_Chr6g0248441 Rosa chinensis HOM05D006380 ORTHO05D008400 8.2e-11 73.2 408 22.5
Psat7g257160 Pisum sativum HOM05D006380 ORTHO05D008400 1.1e-10 72.8 414 22.9
SalBow6G3392 Salvia bowleyana HOM05D006380 ORTHO05D008400 1.1e-10 72.8 413 22.5
THA.LOC104812194 Tarenaya hassleriana HOM05D006380 ORTHO05D008400 1.1e-10 72.8 366 21.9
Carub.0001s1760 Capsella rubella HOM05D006380 ORTHO05D008400 1.4e-10 72.4 429 22.6
Cfa004699 Carpinus fangiana HOM05D006380 ORTHO05D008400 1.4e-10 72.4 373 21.7
Lj3g0024697 Lotus japonicus HOM05D006380 ORTHO05D008400 1.4e-10 72.4 385 23.4
Sabra16G0181300 Salix brachista HOM05D006380 ORTHO05D008400 1.4e-10 72.4 401 22.7
CSS0017857 Camellia sinensis var. sinensis HOM05D006380 ORTHO05D008400 1.8e-10 72.0 415 21.7
Gohir.D01G009000 Gossypium hirsutum HOM05D006380 ORTHO05D008400 1.8e-10 72.0 368 22.8
Nitab4.5_0001099g0050 Nicotiana tabacum HOM05D006380 ORTHO05D008400 3.1e-10 71.2 358 22.9
Duzib132G0363 Durio zibethinus HOM05D006380 ORTHO05D008400 4.1e-10 70.9 367 22.9
Eucgr.G01188 Eucalyptus grandis HOM05D006380 ORTHO05D008400 4.1e-10 70.9 415 22.4
MD10G1110200 Malus domestica HOM05D006380 ORTHO05D008400 4.1e-10 70.9 417 22.5
QL09p050079 Quercus lobata HOM05D006380 ORTHO05D008400 5.3e-10 70.5 369 22.2
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 9.1e-10 69.7 363 22.3
Mapoly0031s0058 Marchantia polymorpha HOM05D006949 ORTHO05D008621 9.1e-10 69.7 354 22.9
SGA_v2.0_scaffold225G43062 Striga asiatica HOM05D006380 ORTHO05D008400 1.2e-09 69.3 401 22.7
TAR628G0543 Trochodendron aralioides HOM05D006380 ORTHO05D008400 2.0e-09 68.6 367 21.0
Phvul.002G050700 Phaseolus vulgaris HOM05D006380 ORTHO05D008400 2.6e-09 68.2 367 22.6
SEGI_29752 Sequoiadendron giganteum HOM05D006380 ORTHO05D008400 2.6e-09 68.2 418 23.0
GSVIVG01037052001 Vitis vinifera HOM05D006380 ORTHO05D008400 2.6e-09 68.2 367 21.3
CsaV3_4G000080 Cucumis sativus L. HOM05D006380 ORTHO05D008400 3.5e-09 67.8 417 21.8
Nitab4.5_0010145g0010 Nicotiana tabacum HOM05D006380 ORTHO05D008400 3.5e-09 67.8 343 22.4
Sed0021356 Sechium edule HOM05D006380 ORTHO05D008400 3.5e-09 67.8 412 21.6
Thecc.02G120100 Theobroma cacao HOM05D006380 ORTHO05D008400 3.5e-09 67.8 377 22.3
AagrBONN_evm.TU.Sc2ySwM_368.3351 Anthoceros agrestis HOM05D006949 ORTHO05D008621 4.5e-09 67.4 359 21.4
Hund23896 Selenicereus undatus HOM05D006949 ORTHO05D008621 4.5e-09 67.4 354 23.7
Aqoxy5G00814 Aquilegia oxysepala HOM05D006380 ORTHO05D008400 5.9e-09 67.0 415 22.4
MELO3C018023.2 Cucumis melo HOM05D006380 ORTHO05D008400 5.9e-09 67.0 370 21.6
MSTRG.16672 Avicennia marina HOM05D006380 ORTHO05D008400 1.0e-08 66.2 354 21.2
SMO239G0018 Selaginella moellendorffii HOM05D006380 ORTHO05D008400 1.0e-08 66.2 369 20.9
ECA240G4721 Erigeron canadensis HOM05D006380 ORTHO05D008400 1.3e-08 65.9 343 21.3
Sopen06g009220 Solanum pennellii HOM05D006949 ORTHO05D008621 1.3e-08 65.9 346 24.0
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 1.3e-08 65.9 353 23.2
Glyma.01G241500 Glycine max HOM05D006380 ORTHO05D008400 1.7e-08 65.5 412 21.4
HanXRQChr08g0222291 Helianthus annuus HOM05D006949 ORTHO05D008621 2.2e-08 65.1 353 23.5
Pp3c20_2440 Physcomitrium patens HOM05D006380 ORTHO05D008400 2.2e-08 65.1 254 23.6
ATR0739G100 Amborella trichopoda HOM05D006380 ORTHO05D008400 5.0e-08 63.9 302 23.2
Pp3c24_14160 Physcomitrium patens HOM05D006380 ORTHO05D008400 5.0e-08 63.9 254 24.0
AagrBONN_evm.TU.Sc2ySwM_304.1 Anthoceros agrestis HOM05D006949 ORTHO05D008621 6.5e-08 63.5 358 20.9
Gohir.D11G242200 Gossypium hirsutum HOM05D005887 ORTHO05D007694 6.5e-08 63.5 275 25.1
arahy.Tifrunner.gnm1.ann1.4AIN5Y Arachis hypogaea HOM05D005887 ORTHO05D007694 8.5e-08 63.2 379 23.2
Aa31LG9G14060 Aethionema arabicum HOM05D005887 ORTHO05D007694 1.1e-07 62.8 216 28.2
EL10Ac5g11724 Beta vulgaris HOM05D005887 ORTHO05D007694 1.1e-07 62.8 217 29.5
Ca_20446_v3 Cicer arietinum L. HOM05D006380 ORTHO05D008400 1.1e-07 62.8 250 25.6
MCO02G246 Micromonas commoda HOM05D005887 ORTHO05D007694 1.1e-07 62.8 243 24.3
Psat3g087360 Pisum sativum HOM05D005887 ORTHO05D007694 1.1e-07 62.8 217 30.0
Solyc06g019200.4 Solanum lycopersicum HOM05D006949 ORTHO05D008621 1.4e-07 62.4 340 24.4
Cfa017707 Carpinus fangiana HOM05D005887 ORTHO05D007694 1.9e-07 62.0 216 26.4
Haze_20429 Corylus avellana HOM05D005887 ORTHO05D007694 2.5e-07 61.6 215 25.6
Sp7g07090 Schrenkiella parvula HOM05D005887 ORTHO05D007694 2.5e-07 61.6 215 25.1
Thhalv10003446m.g Eutrema salsugineum HOM05D005887 ORTHO05D007694 3.2e-07 61.2 217 27.6
Atru.chr2.1494 Acer truncatum HOM05D005887 ORTHO05D007694 4.2e-07 60.8 209 31.1
Manes.09G137200 Manihot esculenta HOM05D005887 ORTHO05D007694 4.2e-07 60.8 215 25.1
SalBow6G3467 Salvia bowleyana HOM05D005887 ORTHO05D007694 4.2e-07 60.8 215 27.9
SalBow6G6179 Salvia bowleyana HOM05D005887 ORTHO05D007694 4.2e-07 60.8 215 27.9
VMungo1215G0608 Vigna mungo HOM05D006380 ORTHO05D008400 4.2e-07 60.8 437 22.4
MD14G1007000 Malus domestica HOM05D005887 ORTHO05D007694 5.5e-07 60.5 216 26.9
Mapoly0031s0097 Marchantia polymorpha HOM05D006380 ORTHO05D008400 5.5e-07 60.5 436 20.4
TWI32G0189 Tripterygium wilfordii HOM05D005887 ORTHO05D007694 5.5e-07 60.5 224 28.1
Phvul.001G115400 Phaseolus vulgaris HOM05D005887 ORTHO05D007694 7.2e-07 60.1 215 27.0
Phvul.008G225100 Phaseolus vulgaris HOM05D006949 ORTHO05D008621 7.2e-07 60.1 347 24.2
RcHm_v2.0_Chr3g0496231 Rosa chinensis HOM05D005887 ORTHO05D007694 7.2e-07 60.1 216 26.9
VMungo1383G0364 Vigna mungo HOM05D005887 ORTHO05D007694 7.2e-07 60.1 215 27.0
Carub.0007s3113 Capsella rubella HOM05D005887 ORTHO05D007694 9.4e-07 59.7 220 26.8
CARHR217310 Cardamine hirsuta HOM05D005887 ORTHO05D007694 9.4e-07 59.7 220 26.4
Glyma.19G116000 Glycine max HOM05D005887 ORTHO05D007694 9.4e-07 59.7 217 29.0
Lj9C337G13 Lonicera japonica HOM05D006380 ORTHO05D008400 9.4e-07 59.7 241 23.7
PGR142G3047 Punica granatum HOM05D005887 ORTHO05D007694 9.4e-07 59.7 218 27.1
Sabra13G0056600 Salix brachista HOM05D005887 ORTHO05D007694 9.4e-07 59.7 215 26.0
CAN.G128.144 Capsicum annuum HOM05D005887 ORTHO05D007694 1.2e-06 59.3 208 28.4
AUR62036255 Chenopodium quinoa HOM05D005887 ORTHO05D007694 1.2e-06 59.3 217 28.6
Gorai.002G011000 Gossypium raimondii HOM05D006380 ORTHO05D008400 1.2e-06 59.3 206 25.7
Nitab4.5_0000387g0010 Nicotiana tabacum HOM05D005887 ORTHO05D007694 1.2e-06 59.3 208 28.4
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 1.6e-06 58.9 350 22.3
Glyma.16G037100 Glycine max HOM05D005887 ORTHO05D007694 1.6e-06 58.9 215 27.0
Medtr7g086430 Medicago truncatula HOM05D005887 ORTHO05D007694 1.6e-06 58.9 192 28.6
Prupe.7G011600 Prunus persica HOM05D005887 ORTHO05D007694 1.6e-06 58.9 216 27.3
PGSC0003DMG400028216 Solanum tuberosum HOM05D005887 ORTHO05D007694 1.6e-06 58.9 208 27.9
Zm00001eb060350 Zea mays HOM05D005887 ORTHO05D007694 1.6e-06 58.9 176 29.5
Zm00001eb213150 Zea mays HOM05D005887 ORTHO05D007694 1.6e-06 58.9 176 29.5
AT5G35220 Arabidopsis thaliana HOM05D005887 ORTHO05D007694 2.1e-06 58.5 212 27.4
Ciclev10019476m.g Citrus clementina HOM05D005887 ORTHO05D007694 2.1e-06 58.5 216 26.4
Migut.J01533 Erythranthe guttata HOM05D005887 ORTHO05D007694 2.1e-06 58.5 215 24.7
Potri.013G064700 Populus trichocarpa HOM05D005887 ORTHO05D007694 2.1e-06 58.5 215 25.6
AL7G44120 Arabidopsis lyrata HOM05D005887 ORTHO05D007694 2.7e-06 58.2 220 25.9
Gohir.A11G230900 Gossypium hirsutum HOM05D005887 ORTHO05D007694 2.7e-06 58.2 215 27.0
Lj1g0025826 Lotus japonicus HOM05D005887 ORTHO05D007694 2.7e-06 58.2 207 28.0
unitig_60.g25490 Utricularia gibba HOM05D005887 ORTHO05D007694 2.7e-06 58.2 215 25.6
A05p16500 Brassica napus HOM05D005887 ORTHO05D007694 3.6e-06 57.8 209 28.2
BraA05t20555Z Brassica rapa HOM05D005887 ORTHO05D007694 3.6e-06 57.8 209 28.2
CsaV3_4G012000 Cucumis sativus L. HOM05D005887 ORTHO05D007694 3.6e-06 57.8 176 30.1
Nitab4.5_0011881g0010 Nicotiana tabacum HOM05D006949 ORTHO05D008621 3.6e-06 57.8 349 23.5
GSVIVG01029948001 Vitis vinifera HOM05D005887 ORTHO05D007694 3.6e-06 57.8 215 26.5
MSTRG.19728 Avicennia marina HOM05D005887 ORTHO05D007694 4.7e-06 57.4 215 25.1
BcaB02g08052 Brassica carinata HOM05D005887 ORTHO05D007694 4.7e-06 57.4 208 27.4
BcaC08g44312 Brassica carinata HOM05D005887 ORTHO05D007694 4.7e-06 57.4 209 28.2
C06p17350 Brassica napus HOM05D005887 ORTHO05D007694 4.7e-06 57.4 209 28.2
BolC6t36931H Brassica oleracea HOM05D005887 ORTHO05D007694 4.7e-06 57.4 209 28.2
Dinv05561 Davidia involucrata HOM05D005887 ORTHO05D007694 4.7e-06 57.4 176 29.5
Gorai.007G256500 Gossypium raimondii HOM05D005887 ORTHO05D007694 4.7e-06 57.4 215 27.0
Nitab4.5_0000613g0020 Nicotiana tabacum HOM05D005887 ORTHO05D007694 4.7e-06 57.4 176 29.5
Sopen10g031970 Solanum pennellii HOM05D005887 ORTHO05D007694 4.7e-06 57.4 208 27.9
arahy.Tifrunner.gnm1.ann1.AI33FF Arachis hypogaea HOM05D005887 ORTHO05D007694 6.1e-06 57.0 310 24.2
CAN.G671.3 Capsicum annuum HOM05D006949 ORTHO05D008621 6.1e-06 57.0 353 23.8
Ca_08305_v3 Cicer arietinum L. HOM05D005887 ORTHO05D007694 6.1e-06 57.0 215 26.5
FvH4_1g28520 Fragaria vesca HOM05D005887 ORTHO05D007694 6.1e-06 57.0 176 29.5
FAN19G2652 Fragaria x ananassa HOM05D005887 ORTHO05D007694 6.1e-06 57.0 176 29.5
FAN23G2292 Fragaria x ananassa HOM05D005887 ORTHO05D007694 6.1e-06 57.0 176 29.5
FAN26G0029 Fragaria x ananassa HOM05D005887 ORTHO05D007694 6.1e-06 57.0 176 29.5
Solyc10g081470.2 Solanum lycopersicum HOM05D005887 ORTHO05D007694 6.1e-06 57.0 208 27.9
TPR.G17873 Trifolium pratense HOM05D005887 ORTHO05D007694 6.1e-06 57.0 216 27.8
MELO3C008847.2 Cucumis melo HOM05D005887 ORTHO05D007694 8.0e-06 56.6 175 29.7
ECA233G0274 Erigeron canadensis HOM05D005887 ORTHO05D007694 8.0e-06 56.6 177 29.4
Os03g0792400 Oryza sativa ssp. japonica HOM05D005887 ORTHO05D007694 8.0e-06 56.6 176 29.0
Peaxi162Scf00575g00211 Petunia axillaris HOM05D005887 ORTHO05D007694 8.0e-06 56.6 176 29.5


User provided reference genes

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