Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 0.0e+00 2015.0 1030 100.0
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 7.2e-190 668.7 658 53.0
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 8.0e-189 665.2 633 52.9
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 8.2e-186 655.2 633 51.8
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 2.0e-184 650.6 660 51.7
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 7.7e-184 648.7 653 52.7
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 3.6e-181 639.8 633 51.8
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.2e-179 634.8 633 50.9
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 2.0e-179 634.0 633 51.8
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 2.0e-179 634.0 633 51.2
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 4.1e-177 626.3 664 48.6
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 1.6e-176 624.4 664 48.6
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 1.6e-176 624.4 633 50.1
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 2.0e-176 624.0 630 51.9
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 2.0e-176 624.0 636 50.0
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 2.7e-176 623.6 639 50.7
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 4.5e-176 622.9 641 50.5
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 7.7e-176 622.1 631 50.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.0e-175 621.7 633 49.8
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 1.7e-175 620.9 632 50.3
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 2.9e-175 620.2 665 49.5
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 5.0e-175 619.4 658 49.1
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.5e-174 617.8 633 50.4
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 4.2e-174 616.3 630 50.3
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 2.1e-173 614.0 646 49.4
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 1.2e-171 608.2 633 48.3
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 2.0e-171 607.4 629 49.0
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 2.6e-171 607.1 629 49.8
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 2.6e-171 607.1 633 49.9
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 2.6e-171 607.1 658 48.2
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 2.6e-171 607.1 610 51.8
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 2.6e-171 607.1 630 49.5
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 3.4e-171 606.7 636 49.2
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 9.8e-171 605.1 633 48.3
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 1.3e-170 604.7 633 48.7
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 1.3e-170 604.7 673 47.7
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 2.2e-170 604.0 643 49.0
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.2e-170 604.0 633 49.3
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 2.2e-170 604.0 638 48.3
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 1.1e-169 601.7 650 48.6
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.4e-169 601.3 633 48.0
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 1.4e-169 601.3 658 47.4
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.4e-169 601.3 632 49.1
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.4e-169 600.5 643 49.1
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.1e-169 600.1 633 49.4
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.1e-169 600.1 643 49.3
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 4.1e-169 599.7 630 49.4
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 5.4e-169 599.4 626 48.2
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 9.2e-169 598.6 633 49.3
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 2.0e-168 597.4 633 47.4
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 3.5e-168 596.7 646 48.5
ATR0787G183 Amborella trichopoda HOM05D003193 ORTHO05D004924 4.5e-168 596.3 646 49.5
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 4.5e-168 596.3 673 46.4
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 4.5e-168 596.3 630 48.9
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 1.3e-167 594.7 663 45.9
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 1.7e-167 594.3 633 48.5
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.7e-167 594.3 630 48.1
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 2.9e-167 593.6 663 46.2
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 2.9e-167 593.6 638 48.4
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.9e-166 590.9 655 48.4
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 4.3e-166 589.7 633 47.2
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 7.3e-166 589.0 653 46.1
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 9.5e-166 588.6 630 47.8
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.2e-165 588.2 646 48.1
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 2.1e-165 587.4 633 47.2
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 3.6e-165 586.6 672 46.9
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 2.3e-164 583.9 638 48.0
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 2.3e-164 583.9 633 47.1
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 5.2e-164 582.8 664 46.4
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 8.9e-164 582.0 664 46.4
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 3.4e-163 580.1 692 44.9
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 4.4e-163 579.7 631 47.4
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 1.3e-162 578.2 624 47.6
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 2.2e-162 577.4 659 46.1
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 8.3e-162 575.5 631 46.9
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 8.3e-162 575.5 631 46.9
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 8.3e-162 575.5 631 46.6
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 1.1e-161 575.1 649 46.4
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 9.2e-161 572.0 631 47.4
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.6e-160 571.2 631 47.1
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 3.5e-160 570.1 626 47.3
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 4.6e-160 569.7 631 46.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 4.6e-160 569.7 631 46.4
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.0e-160 569.3 630 47.5
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.0e-160 569.3 630 47.5
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.7e-159 567.8 662 45.6
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 3.9e-159 566.6 638 46.2
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 3.9e-159 566.6 654 45.6
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 6.6e-159 565.8 631 46.3
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 4.3e-158 563.1 630 46.2
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 5.2e-156 556.2 675 44.7
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 7.8e-152 542.3 646 46.7
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 9.5e-150 535.4 658 44.4
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.2e-147 528.5 633 45.7
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 6.4e-146 522.7 606 45.7
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 8.6e-143 512.3 588 46.6
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 2.4e-137 494.2 525 47.8
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 2.4e-132 477.6 648 43.4
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.1e-132 477.2 544 46.0
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 1.5e-126 458.4 650 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 4.5e-107 393.7 623 38.5
SEGI_07325 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 8.7e-103 379.4 195 90.8
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 8.5e-98 362.8 634 36.0
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.8e-95 355.1 348 49.1
Actinidia06818 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.6e-83 314.7 448 41.3
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 2.3e-79 301.6 324 47.2
SEGI_30748 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 2.1e-72 278.5 184 66.3
SEGI_35559 Sequoiadendron giganteum HOM05D000725 ORTHO05D002005 8.3e-61 240.0 334 39.8
SHI15643 Sapria himalayana HOM05D003193 ORTHO05D004924 2.0e-54 218.8 251 44.2
SEGI_34208 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 2.3e-50 205.3 289 37.0
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 1.7e-42 179.1 135 65.9
SEGI_31457 Sequoiadendron giganteum HOM05D010022 ORTHO05D037593 1.1e-41 176.4 341 33.7
SEGI_16610 Sequoiadendron giganteum HOM05D001439 ORTHO05D017116 9.5e-41 173.3 285 31.2
SEGI_01020 Sequoiadendron giganteum HOM05D001439 ORTHO05D017116 1.6e-40 172.6 333 28.8
SEGI_12643 Sequoiadendron giganteum HOM05D018676 ORTHO05D017321 3.1e-39 168.3 132 61.4
SEGI_35696 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 2.6e-38 165.2 96 76.0
SEGI_30437 Sequoiadendron giganteum HOM05D000238 ORTHO05D007027 4.9e-37 161.0 136 56.6
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 8.3e-37 160.2 105 67.6
SEGI_16908 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 6.6e-34 150.6 210 39.0
Os02g0538400 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 3.3e-33 148.3 249 34.5
MD04G1234100 Malus domestica HOM05D003193 ORTHO05D004924 5.6e-33 147.5 113 61.9
SEGI_06305 Sequoiadendron giganteum HOM05D003193 ORTHO05D002687 1.2e-32 146.4 195 36.9
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 6.8e-31 140.6 273 28.9
SEGI_32205 Sequoiadendron giganteum HOM05D001876 ORTHO05D017116 4.1e-28 131.3 285 27.0
SEGI_17876 Sequoiadendron giganteum HOM05D005216 ORTHO05D006453 3.5e-27 128.3 73 78.1
SEGI_19104 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.5e-27 128.3 101 59.4
SEGI_18754 Sequoiadendron giganteum HOM05D006301 ORTHO05D000646 2.1e-24 119.0 175 37.1
SEGI_34435 Sequoiadendron giganteum HOM05D018636 ORTHO05D007027 3.4e-22 111.7 188 34.6
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.6e-22 110.5 249 29.3
SEGI_07771 Sequoiadendron giganteum HOM05D000991 ORTHO05D000848 1.9e-17 95.9 55 83.6
SEGI_15344 Sequoiadendron giganteum HOM05D001938 ORTHO05D001965 1.6e-16 92.8 108 43.5
SEGI_22155 Sequoiadendron giganteum HOM05D000644 ORTHO05D000504 3.6e-16 91.7 141 32.6
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 1.1e-15 90.1 146 35.6
MD04G1234200 Malus domestica HOM05D003193 ORTHO05D004924 1.4e-15 89.7 98 49.0
SEGI_01127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.4e-15 89.7 136 34.6
Actinidia11722 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.6e-14 85.5 74 59.5
SEGI_35780 Sequoiadendron giganteum HOM05D002947 ORTHO05D003447 5.8e-14 84.3 158 27.2
SEGI_09395 Sequoiadendron giganteum HOM05D006301 ORTHO05D007910 1.7e-13 82.8 109 40.4
SHI15645 Sapria himalayana HOM05D003193 ORTHO05D004924 3.8e-13 81.6 112 38.4
SEGI_05359 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 4.9e-13 81.3 114 34.2
SEGI_00817 Sequoiadendron giganteum HOM05D000124 ORTHO05D007027 3.2e-12 78.6 124 37.1
SEGI_27028 Sequoiadendron giganteum HOM05D000737 ORTHO05D000581 3.2e-12 78.6 178 27.0
SEGI_27565 Sequoiadendron giganteum HOM05D006301 ORTHO05D012121 7.1e-12 77.4 135 32.6
SEGI_14643 Sequoiadendron giganteum HOM05D003509 ORTHO05D004205 9.3e-12 77.0 132 32.6
SMO353G0297 Selaginella moellendorffii HOM05D003193 ORTHO05D374493 2.1e-11 75.9 229 28.8
SEGI_01205 Sequoiadendron giganteum HOM05D008617 ORTHO05D010792 2.7e-11 75.5 135 31.9
SEGI_04478 Sequoiadendron giganteum HOM05D006301 ORTHO05D007027 1.0e-10 73.6 99 32.3
SEGI_12592 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 2.3e-10 72.4 137 34.3
SEGI_10394 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.5e-09 69.7 85 42.4
SEGI_15336 Sequoiadendron giganteum HOM05D000033 ORTHO05D010457 2.5e-09 68.9 85 40.0
SEGI_26090 Sequoiadendron giganteum HOM05D001936 ORTHO05D002296 2.5e-09 68.9 107 30.8
SEGI_22574 Sequoiadendron giganteum HOM05D000079 ORTHO05D006933 4.3e-09 68.2 113 31.9
SEGI_33204 Sequoiadendron giganteum HOM05D005982 ORTHO05D007891 7.3e-09 67.4 41 70.7
SEGI_33305 Sequoiadendron giganteum HOM05D003118 ORTHO05D003618 1.6e-08 66.2 105 33.3
SEGI_31911 Sequoiadendron giganteum HOM05D001439 ORTHO05D017116 1.2e-06 60.1 67 37.3
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 2.0e-06 59.3 59 45.8
RcHm_v2.0_Chr5g0043171 Rosa chinensis HOM05D003193 ORTHO05D004924 2.0e-06 59.3 58 48.3


User provided reference genes

Program Settings