Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.7e-66 253.8 125 100.0
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.2e-46 189.9 123 70.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 2.7e-46 188.7 123 70.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.5e-46 188.0 123 70.7
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 7.7e-46 187.2 123 69.9
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 3.8e-45 184.9 123 69.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.0e-45 184.5 123 68.3
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.5e-45 184.1 123 67.5
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.5e-44 183.0 123 69.1
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.9e-44 182.6 123 68.3
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.2e-44 181.8 123 67.5
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.2e-44 181.4 123 65.9
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 5.5e-44 181.0 123 67.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.2e-43 179.9 123 67.5
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.7e-43 178.7 123 65.9
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.6e-43 178.3 123 66.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 4.7e-43 177.9 123 65.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.7e-43 177.9 123 65.9
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.7e-43 177.9 123 62.6
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 4.7e-43 177.9 123 65.9
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.7e-43 177.9 123 66.7
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.1e-43 177.6 123 66.7
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 6.1e-43 177.6 123 65.9
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 8.0e-43 177.2 123 65.0
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 8.0e-43 177.2 123 65.0
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.0e-42 176.8 123 65.9
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.0e-42 176.8 123 65.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.4e-42 176.4 123 65.0
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 2.3e-42 175.6 123 65.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.3e-42 175.6 123 65.0
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 3.0e-42 175.3 123 65.9
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-42 175.3 123 64.2
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-42 175.3 123 64.2
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 4.0e-42 174.9 123 65.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.0e-42 174.9 123 63.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 5.2e-42 174.5 123 64.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 5.2e-42 174.5 123 63.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 6.8e-42 174.1 123 64.2
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 6.8e-42 174.1 123 65.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 8.8e-42 173.7 123 63.4
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 8.8e-42 173.7 123 63.4
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.2e-41 173.3 123 64.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.2e-41 173.3 123 64.2
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.5e-41 172.9 123 63.4
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.0e-41 172.6 123 63.4
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.0e-41 172.6 123 65.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.6e-41 172.2 123 64.2
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.4e-41 171.4 123 64.2
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.4e-41 171.4 123 64.2
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 4.4e-41 171.4 123 63.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.4e-41 171.4 123 61.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.4e-41 171.4 123 65.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 5.7e-41 171.0 116 66.4
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.3e-40 169.9 123 62.6
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.3e-40 169.9 123 62.6
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.7e-40 169.5 123 62.6
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.2e-40 169.1 144 58.3
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 2.8e-40 168.7 123 62.6
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 3.7e-40 168.3 123 62.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 8.3e-40 167.2 123 64.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.1e-39 166.8 123 61.0
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.1e-39 166.8 123 63.4
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-39 166.4 123 64.2
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.4e-39 166.4 123 61.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.4e-39 166.4 123 61.0
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.4e-39 166.4 123 61.0
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.4e-39 166.4 123 61.0
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.4e-39 165.6 123 60.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.4e-39 165.6 123 63.4
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 4.1e-39 164.9 123 61.8
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.1e-39 164.9 123 61.8
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.0e-39 164.1 123 59.3
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-38 163.3 123 61.8
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.0e-38 162.5 123 61.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.5e-38 161.8 123 60.2
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 7.7e-38 160.6 123 60.2
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 7.7e-38 160.6 123 61.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 7.7e-38 160.6 123 61.0
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 7.7e-38 160.6 123 58.5
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.0e-37 160.2 123 60.2
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.0e-37 160.2 123 60.2
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.0e-37 160.2 123 60.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-37 159.8 123 60.2
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.3e-37 159.8 123 60.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.3e-37 159.8 123 61.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.3e-37 159.1 123 59.3
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 3.8e-37 158.3 123 58.5
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.8e-37 158.3 123 59.3
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 3.8e-37 158.3 123 58.5
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.5e-36 156.4 123 57.7
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 4.2e-36 154.8 123 56.9
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 4.2e-36 154.8 121 58.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-35 153.3 123 56.9
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.1e-35 152.5 123 55.3
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.1e-35 152.5 123 55.3
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.3e-34 149.1 123 58.5
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 6.3e-32 141.0 93 66.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.3e-32 141.0 123 53.7
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 8.3e-32 140.6 123 53.7
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.4e-31 139.0 123 53.7
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.0e-30 136.0 147 48.3
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 2.7e-30 135.6 123 51.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-29 133.3 123 52.0
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 5.0e-29 131.3 93 62.4
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.1e-28 130.2 94 58.5
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.8e-26 122.9 123 46.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 6.4e-24 114.4 123 42.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 7.8e-22 107.5 123 43.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.6e-14 83.2 118 41.5
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.1e-12 77.0 59 54.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.6e-11 73.2 60 53.3
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 3.1e-10 68.9 101 43.6
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.1e-07 60.5 83 42.2


User provided reference genes

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