Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.1e-140 502.3 244 100.0
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 9.1e-75 284.3 199 66.8
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 5.9e-74 281.6 215 61.9
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 5.9e-74 281.6 199 66.3
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 7.7e-74 281.2 215 61.4
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 8.5e-73 277.7 215 62.3
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 7.2e-72 274.6 215 61.4
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 7.2e-72 274.6 215 61.4
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 7.2e-72 274.6 215 61.4
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 7.2e-72 274.6 197 64.0
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 2.1e-71 273.1 215 59.5
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.6e-71 272.3 218 59.6
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 7.9e-71 271.2 215 60.5
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 7.9e-71 271.2 208 62.0
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 1.0e-70 270.8 199 63.8
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 3.0e-70 269.2 220 59.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 3.0e-70 269.2 215 58.1
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 6.7e-70 268.1 199 63.3
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 6.7e-70 268.1 219 58.4
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 8.8e-70 267.7 223 56.5
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 1.1e-69 267.3 229 57.6
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.1e-69 267.3 210 58.6
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 2.6e-69 266.2 219 59.4
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 5.7e-69 265.0 237 56.1
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 5.7e-69 265.0 215 58.1
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.4e-69 264.6 216 58.8
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 9.7e-69 264.2 197 63.5
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 9.7e-69 264.2 215 59.5
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.7e-69 264.2 216 58.8
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 9.7e-69 264.2 226 56.6
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.7e-68 263.5 197 62.9
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.7e-68 263.5 216 58.3
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 1.7e-68 263.5 214 58.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 2.8e-68 262.7 210 60.0
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 3.7e-68 262.3 210 61.0
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 3.7e-68 262.3 194 61.9
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 4.8e-68 261.9 210 59.5
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 4.8e-68 261.9 199 62.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 6.3e-68 261.5 197 60.4
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 6.3e-68 261.5 212 59.9
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 8.2e-68 261.2 214 59.3
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.1e-67 260.8 230 55.2
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-67 260.8 216 57.9
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-67 260.8 196 61.7
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-67 260.0 216 57.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.4e-67 259.6 215 58.6
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.4e-67 259.6 225 57.3
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 2.4e-67 259.6 229 54.6
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.1e-67 259.2 213 58.2
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 4.1e-67 258.8 212 58.5
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.3e-67 258.5 216 57.4
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 7.0e-67 258.1 211 58.3
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 7.0e-67 258.1 197 61.9
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 9.1e-67 257.7 216 57.9
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.2e-66 257.3 209 59.3
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.2e-66 257.3 217 56.7
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 1.5e-66 256.9 205 58.0
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.5e-66 256.9 198 62.6
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 2.6e-66 256.1 211 58.8
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 3.4e-66 255.8 197 60.9
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 4.5e-66 255.4 220 56.4
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 4.5e-66 255.4 231 54.1
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 5.9e-66 255.0 196 59.2
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.0e-65 254.2 197 60.4
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.0e-65 254.2 209 58.9
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.0e-65 254.2 214 57.0
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.0e-65 254.2 209 57.9
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 1.3e-65 253.8 197 60.9
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 1.7e-65 253.4 220 55.9
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.7e-65 253.4 202 58.9
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.2e-65 253.1 208 58.7
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.2e-65 253.1 197 60.9
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 2.2e-65 253.1 197 60.4
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.2e-65 253.1 197 60.4
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 2.2e-65 253.1 197 60.9
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.9e-65 252.7 213 59.2
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 2.9e-65 252.7 211 57.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 2.9e-65 252.7 205 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 6.5e-65 251.5 211 57.8
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.1e-64 250.8 235 53.6
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 1.4e-64 250.4 195 59.5
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.4e-64 250.4 208 58.2
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 2.5e-64 249.6 210 54.8
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 4.2e-64 248.8 195 59.5
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.6e-63 246.9 197 58.9
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.6e-63 246.9 220 54.5
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 2.1e-63 246.5 217 55.8
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 2.1e-63 246.5 216 55.1
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 8.0e-63 244.6 195 60.0
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.0e-62 244.2 204 56.9
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.8e-62 243.4 208 58.7
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.8e-62 243.4 215 56.3
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 2.3e-62 243.0 197 58.4
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 3.0e-62 242.7 230 53.5
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 2.8e-60 236.1 211 55.5
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 5.9e-58 228.4 205 53.7
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 1.0e-57 227.6 184 57.6
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.0e-57 227.6 215 51.6
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.7e-57 226.9 193 57.0
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 2.9e-57 226.1 175 59.4
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.9e-57 226.1 175 59.4
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 3.8e-57 225.7 225 50.2
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 6.5e-57 224.9 255 47.1
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.0e-54 217.6 170 58.2
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 3.1e-51 206.1 151 61.6
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.1e-51 205.7 183 54.1
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.1e-51 205.7 183 54.1
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 5.3e-51 205.3 207 50.7
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-49 200.3 163 57.7
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-49 200.3 163 57.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 9.4e-48 194.5 151 58.3
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 2.7e-42 176.4 199 46.7
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.9e-40 170.2 151 52.3
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 3.7e-36 156.0 195 43.6
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 7.8e-34 148.3 124 58.1
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 8.3e-28 128.3 116 53.4
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 2.1e-23 113.6 138 44.2
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.1e-22 111.3 100 53.0
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.9e-22 108.2 183 36.6
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.7e-20 102.8 163 38.0
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.7e-20 102.8 163 38.0
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.7e-20 102.8 163 38.0
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.7e-20 102.8 163 38.0
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.7e-20 102.8 163 38.0
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.7e-20 102.8 163 38.0
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.1e-16 91.3 130 38.5
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 1.1e-11 74.7 107 36.4
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 5.1e-09 65.9 115 35.7
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 1.9e-08 63.9 51 54.9
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 3.1e-06 56.6 163 28.8
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 8.9e-06 55.1 52 53.8


User provided reference genes

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