Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25541 Sequoiadendron giganteum HOM05D007351 ORTHO05D017832 1.3e-122 443.0 215 100.0
Pp3c16_22900 Physcomitrium patens HOM05D033550 ORTHO05D017832 1.5e-36 157.1 160 50.0
SMO356G0017 Selaginella moellendorffii HOM05D007351 ORTHO05D017832 1.8e-34 150.2 155 49.0
MCO11G501 Micromonas commoda HOM05D027270 ORTHO05D017832 4.2e-15 85.9 152 28.9
Cre16.g683300 Chlamydomonas reinhardtii HOM05D027270 ORTHO05D017832 7.1e-15 85.1 144 32.6
CARHR115710 Cardamine hirsuta HOM05D007351 ORTHO05D009386 7.6e-09 65.1 137 32.8
Sp4g05090 Schrenkiella parvula HOM05D007351 ORTHO05D009386 1.3e-08 64.3 135 31.9
AT2G25605 Arabidopsis thaliana HOM05D007351 ORTHO05D009386 2.9e-08 63.2 137 31.4
BcaC02g08337 Brassica carinata HOM05D007351 ORTHO05D009386 2.9e-08 63.2 137 31.4
A04p19820 Brassica napus HOM05D007351 ORTHO05D009386 2.9e-08 63.2 137 31.4
C04p55560 Brassica napus HOM05D007351 ORTHO05D009386 2.9e-08 63.2 137 31.4
BolC4t27080H Brassica oleracea HOM05D007351 ORTHO05D009386 2.9e-08 63.2 137 31.4
BraA04t17570Z Brassica rapa HOM05D007351 ORTHO05D009386 2.9e-08 63.2 137 31.4
CBR_g40414 Chara braunii HOM05D007351 ORTHO05D009386 2.9e-08 63.2 141 34.0
Carub.0004s0533 Capsella rubella HOM05D007351 ORTHO05D009386 3.8e-08 62.8 137 32.1
ATR0680G179 Amborella trichopoda HOM05D007351 ORTHO05D009386 4.9e-08 62.4 138 31.9
BcaB06g28079 Brassica carinata HOM05D007351 ORTHO05D009386 6.4e-08 62.0 137 30.7
Pp3c17_16830 Physcomitrium patens HOM05D007351 ORTHO05D009386 1.4e-07 60.8 139 30.9
AL4G17070 Arabidopsis lyrata HOM05D007351 ORTHO05D009386 1.9e-07 60.5 138 31.2
Thhalv10000330m.g Eutrema salsugineum HOM05D007351 ORTHO05D009386 1.9e-07 60.5 138 31.9
ECA233G0102 Erigeron canadensis HOM05D007351 ORTHO05D009386 2.4e-07 60.1 138 31.9
TAR625G1337 Trochodendron aralioides HOM05D007351 ORTHO05D009386 2.4e-07 60.1 137 31.4
AagrBONN_evm.TU.Sc2ySwM_228.1243 Anthoceros agrestis HOM05D007351 ORTHO05D009386 3.2e-07 59.7 137 33.6
vmacro05202 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 3.2e-07 59.7 138 31.9
Lalb_Chr23g0268831 Lupinus albus HOM05D007351 ORTHO05D009386 4.2e-07 59.3 137 29.2
PSO017G1621 Papaver somniferum HOM05D007351 ORTHO05D009386 4.2e-07 59.3 178 29.2
THA.LOC104804500 Tarenaya hassleriana HOM05D007351 ORTHO05D009386 4.2e-07 59.3 131 31.3
PSO170G0157 Papaver somniferum HOM05D007351 ORTHO05D009386 5.5e-07 58.9 210 29.0
PRCOL_00003533 Prasinoderma coloniale HOM05D027270 ORTHO05D017832 5.5e-07 58.9 149 30.9
Atru.chr7.2359 Acer truncatum HOM05D007351 ORTHO05D009386 7.1e-07 58.5 137 30.7
MBI04_g00950_MAGBIO Magnolia biondii HOM05D007351 ORTHO05D009386 7.1e-07 58.5 137 31.4
Os05g0574700 Oryza sativa ssp. japonica HOM05D007351 ORTHO05D009386 7.1e-07 58.5 140 29.3
SMO269G0024 Selaginella moellendorffii HOM05D007351 ORTHO05D009386 7.1e-07 58.5 137 30.7
Aqoxy7G02003 Aquilegia oxysepala HOM05D007351 ORTHO05D009386 9.3e-07 58.2 137 29.9
Ciclev10009550m.g Citrus clementina HOM05D007351 ORTHO05D009386 9.3e-07 58.2 138 31.9
Glyma.06G071600 Glycine max HOM05D007351 ORTHO05D009386 9.3e-07 58.2 137 31.4
Gohir.A08G090000 Gossypium hirsutum HOM05D007351 ORTHO05D009386 9.3e-07 58.2 136 30.9
Gorai.004G110800 Gossypium raimondii HOM05D007351 ORTHO05D009386 9.3e-07 58.2 136 30.1
MD08G1141900 Malus domestica HOM05D007351 ORTHO05D009386 9.3e-07 58.2 141 31.2
Thecc.09G147600 Theobroma cacao HOM05D007351 ORTHO05D009386 9.3e-07 58.2 137 31.4
Prupe.1G471900 Prunus persica HOM05D007351 ORTHO05D009386 1.2e-06 57.8 137 30.7
arahy.Tifrunner.gnm1.ann1.C4YKET Arachis hypogaea HOM05D007351 ORTHO05D009386 1.6e-06 57.4 137 30.7
CDE06G1133 Ceratophyllum demersum HOM05D007351 ORTHO05D009386 1.6e-06 57.4 137 30.7
Mapoly0036s0071 Marchantia polymorpha HOM05D007351 ORTHO05D009386 2.1e-06 57.0 136 31.6
Nn2g11909 Nelumbo nucifera HOM05D007351 ORTHO05D009386 2.1e-06 57.0 137 30.7
Potri.006G249000 Populus trichocarpa HOM05D007351 ORTHO05D009386 2.1e-06 57.0 137 29.9
Sabra06G0194800 Salix brachista HOM05D007351 ORTHO05D009386 2.1e-06 57.0 137 29.9
Lsat_1_v5_gn_6_21681 Lactuca sativa HOM05D007351 ORTHO05D009386 2.7e-06 56.6 138 31.2
Manes.16G118400 Manihot esculenta HOM05D007351 ORTHO05D009386 2.7e-06 56.6 200 27.5
Medtr3g107860 Medicago truncatula HOM05D007351 ORTHO05D009386 2.7e-06 56.6 137 30.7
TWI34G1290 Tripterygium wilfordii HOM05D007351 ORTHO05D009386 2.7e-06 56.6 138 29.7
HanXRQChr13g0402411 Helianthus annuus HOM05D007351 ORTHO05D009386 3.5e-06 56.2 86 39.5
Phvul.009G096100 Phaseolus vulgaris HOM05D007351 ORTHO05D009386 3.5e-06 56.2 137 30.7
unitig_32.g11667 Utricularia gibba HOM05D007351 ORTHO05D009386 3.5e-06 56.2 142 30.3
GSVIVG01035772001 Vitis vinifera HOM05D007351 ORTHO05D009386 4.6e-06 55.8 143 30.1
Actinidia15698 Actinidia chinensis HOM05D007351 ORTHO05D009386 6.0e-06 55.5 137 30.7
CSS0046405 Camellia sinensis var. sinensis HOM05D007351 ORTHO05D009386 6.0e-06 55.5 137 29.9
CiPaw.08G014100 Carya illinoinensis HOM05D007351 ORTHO05D009386 6.0e-06 55.5 137 29.9
Eucgr.C01805 Eucalyptus grandis HOM05D007351 ORTHO05D009386 6.0e-06 55.5 137 30.7
Rhsim07G0150700 Rhododendron simsii HOM05D007351 ORTHO05D009386 6.0e-06 55.5 207 28.5
Lj8A616G46 Lonicera japonica HOM05D007351 ORTHO05D009386 7.9e-06 55.1 137 29.9
Lj1g0014043 Lotus japonicus HOM05D007351 ORTHO05D009386 7.9e-06 55.1 137 27.7


User provided reference genes

Program Settings