Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25521 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 1.1e-227 793.1 433 100.0
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 1.2e-69 268.1 461 42.3
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 2.0e-69 267.3 478 41.2
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 1.1e-67 261.5 485 42.9
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 2.5e-67 260.4 510 40.6
MBI07_g03169_MAGBIO Magnolia biondii HOM05D003679 ORTHO05D004265 3.2e-67 260.0 505 39.4
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 4.2e-67 259.6 478 41.0
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 9.4e-67 258.5 472 41.1
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 6.1e-66 255.8 484 40.9
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 8.0e-66 255.4 483 42.0
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 1.4e-65 254.6 456 42.8
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 1.8e-65 254.2 478 41.0
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 3.0e-65 253.4 458 40.8
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 4.0e-65 253.1 457 40.0
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 8.8e-65 251.9 455 42.6
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 2.0e-64 250.8 485 41.9
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 2.0e-64 250.8 453 40.4
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 5.7e-64 249.2 416 42.3
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 5.7e-64 249.2 439 42.1
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 5.7e-64 249.2 461 40.8
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 5.7e-64 249.2 481 39.7
Manes.18G113450 Manihot esculenta HOM05D003679 ORTHO05D004265 7.5e-64 248.8 481 40.5
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 9.8e-64 248.4 483 41.8
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 9.8e-64 248.4 488 40.8
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 9.8e-64 248.4 470 40.4
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 1.3e-63 248.1 458 41.9
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 1.7e-63 247.7 451 40.1
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 2.2e-63 247.3 461 39.7
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 2.8e-63 246.9 407 42.3
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 3.7e-63 246.5 483 41.6
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 6.3e-63 245.7 472 39.6
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 6.3e-63 245.7 422 42.2
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 6.3e-63 245.7 484 40.1
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 6.3e-63 245.7 459 41.6
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 6.3e-63 245.7 485 38.4
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 6.3e-63 245.7 470 38.1
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 1.1e-62 245.0 466 40.6
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 1.4e-62 244.6 483 36.9
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 1.4e-62 244.6 483 40.0
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 1.8e-62 244.2 413 42.4
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 1.8e-62 244.2 459 40.1
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 1.8e-62 244.2 484 40.1
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 1.8e-62 244.2 480 39.8
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 2.4e-62 243.8 480 41.2
Nn1g04396 Nelumbo nucifera HOM05D003679 ORTHO05D004265 4.1e-62 243.0 500 38.0
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 4.1e-62 243.0 479 42.2
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 5.4e-62 242.7 475 40.0
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 5.4e-62 242.7 485 37.1
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 5.4e-62 242.7 466 41.6
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 5.4e-62 242.7 476 41.0
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 9.1e-62 241.9 413 41.4
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 9.1e-62 241.9 472 40.3
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 9.1e-62 241.9 483 37.9
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 1.2e-61 241.5 463 41.0
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 1.6e-61 241.1 481 37.2
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 1.6e-61 241.1 446 39.9
Pp3c9_3750 Physcomitrium patens HOM05D003679 ORTHO05D004265 1.6e-61 241.1 437 39.8
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 2.0e-61 240.7 469 38.0
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 2.0e-61 240.7 473 41.2
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 2.7e-61 240.4 452 41.8
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 3.5e-61 240.0 469 38.0
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 3.5e-61 240.0 449 40.3
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 4.5e-61 239.6 449 39.9
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 4.5e-61 239.6 472 40.5
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 5.9e-61 239.2 406 42.9
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 5.9e-61 239.2 438 41.8
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 5.9e-61 239.2 438 41.8
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 1.0e-60 238.4 487 39.8
BcaB03g14900 Brassica carinata HOM05D003679 ORTHO05D004265 1.3e-60 238.0 407 41.8
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 1.3e-60 238.0 477 41.1
FAN06G3504 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.3e-60 238.0 489 37.4
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.3e-60 238.0 494 36.4
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 1.3e-60 238.0 486 37.7
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 1.7e-60 237.7 459 39.4
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.7e-60 237.7 470 39.4
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 2.3e-60 237.3 449 39.6
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 2.3e-60 237.3 447 39.1
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.9e-60 236.9 471 39.5
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 3.8e-60 236.5 482 39.0
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 5.0e-60 236.1 417 41.0
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 6.6e-60 235.7 494 36.6
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 6.6e-60 235.7 425 41.4
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 8.6e-60 235.3 422 40.3
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 1.1e-59 235.0 475 39.2
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 1.1e-59 235.0 450 40.2
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 1.5e-59 234.6 438 41.3
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 1.9e-59 234.2 429 41.0
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 2.5e-59 233.8 455 39.6
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 3.3e-59 233.4 474 38.4
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 3.3e-59 233.4 477 39.2
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 4.2e-59 233.0 429 40.8
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 5.5e-59 232.6 501 38.3
BcaC08g46576 Brassica carinata HOM05D003679 ORTHO05D004265 7.2e-59 232.3 404 39.9
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 7.2e-59 232.3 404 39.9
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 7.2e-59 232.3 404 39.9
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 9.5e-59 231.9 429 40.8
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 1.6e-58 231.1 398 42.7
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 1.6e-58 231.1 455 39.1
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 2.8e-58 230.3 470 40.0
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 4.7e-58 229.6 470 39.8
Oeu028633.1 Olea europaea HOM05D003679 ORTHO05D004265 4.7e-58 229.6 449 41.4
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 4.7e-58 229.6 449 41.4
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 1.4e-57 228.0 459 44.0
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 1.8e-57 227.6 409 41.8
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 3.0e-57 226.9 406 41.6
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 3.0e-57 226.9 458 43.9
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 8.9e-57 225.3 410 41.7
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 8.9e-57 225.3 441 42.4
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 1.2e-56 224.9 473 38.9
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 1.5e-56 224.6 465 38.7
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 2.0e-56 224.2 463 39.5
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 2.6e-56 223.8 481 37.4
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 4.4e-56 223.0 478 39.5
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 5.7e-56 222.6 481 38.9
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 7.5e-56 222.2 483 38.3
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 1.3e-55 221.5 450 38.7
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.3e-55 221.5 253 51.8
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 2.2e-55 220.7 481 38.0
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 3.7e-55 219.9 411 41.1
Nn1g09117 Nelumbo nucifera HOM05D003679 ORTHO05D004265 6.3e-55 219.2 517 35.6
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 6.3e-55 219.2 486 39.9
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 1.4e-54 218.0 462 40.7
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 1.4e-54 218.0 431 37.8
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 3.2e-54 216.9 408 39.7
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 5.4e-54 216.1 435 39.1
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 9.2e-54 215.3 475 37.1
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 5.9e-53 212.6 461 41.4
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 1.7e-52 211.1 325 45.5
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 2.3e-52 210.7 449 38.5
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 3.9e-52 209.9 408 39.2
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 8.6e-52 208.8 451 37.3
Os01g0616100 Oryza sativa ssp. japonica HOM05D003679 ORTHO05D004265 1.9e-51 207.6 491 35.2
Pp3c15_10870 Physcomitrium patens HOM05D003679 ORTHO05D004265 9.5e-51 205.3 275 46.9
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 1.4e-49 201.4 472 37.3
vmacro11032 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 6.8e-49 199.1 487 37.6
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 1.7e-47 194.5 385 40.0
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.9e-47 193.7 178 59.0
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 6.4e-47 192.6 178 58.4
Gohir.A08G230600 Gossypium hirsutum HOM05D003679 ORTHO05D004265 8.3e-47 192.2 178 58.4
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 8.3e-47 192.2 452 39.4
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 3.4e-40 170.2 391 37.6
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 5.8e-40 169.5 113 74.3
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 4.1e-38 163.3 114 69.3
Psat0s2790g0080 Pisum sativum HOM05D003679 ORTHO05D004265 6.0e-37 159.5 104 76.0
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 6.0e-37 159.5 104 76.0
CBR_g8679 Chara braunii HOM05D003679 ORTHO05D004265 5.6e-35 152.9 344 36.0
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.4e-30 137.5 122 60.7
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 1.0e-28 132.1 411 33.6
SHI16839 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-24 116.7 214 40.7
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 7.8e-21 105.9 74 70.3
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 9.0e-17 92.4 249 32.1
Oeu028930.1 Olea europaea HOM05D003679 ORTHO05D004265 1.2e-13 82.0 57 68.4
CARHR291270 Cardamine hirsuta HOM05D003679 ORTHO05D004265 1.7e-12 78.2 91 50.5
Sabra13G0084400 Salix brachista HOM05D003679 ORTHO05D004265 5.1e-12 76.6 302 32.1
MCO04G527 Micromonas commoda HOM05D003679 ORTHO05D004265 1.6e-10 71.6 123 37.4
CBR_g30330 Chara braunii HOM05D003679 ORTHO05D004265 3.1e-09 67.4 80 46.2
MD01G1055700 Malus domestica HOM05D003679 ORTHO05D004265 3.4e-08 63.9 41 73.2
CBR_g22378 Chara braunii HOM05D003679 ORTHO05D004265 4.5e-08 63.5 436 25.2


User provided reference genes

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