Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25514 Sequoiadendron giganteum HOM05D001543 ORTHO05D001722 7.7e-62 240.4 126 100.0
SEGI_37223 Sequoiadendron giganteum HOM05D001543 ORTHO05D001722 1.1e-12 77.0 103 52.4
HPP92_002461 Vanilla planifolia HOM05D001543 ORTHO05D001722 1.1e-10 70.5 79 54.4
HPP92_002475 Vanilla planifolia HOM05D001543 ORTHO05D001722 1.1e-10 70.5 79 54.4
MELO3C006286.2 Cucumis melo HOM05D001543 ORTHO05D001722 9.0e-10 67.4 41 73.2
CsaV3_3G010670 Cucumis sativus L. HOM05D001543 ORTHO05D001722 9.0e-10 67.4 41 73.2
Os04g0543200 Oryza sativa ssp. japonica HOM05D001543 ORTHO05D001722 1.5e-09 66.6 63 55.6
Aqoxy3G02626 Aquilegia oxysepala HOM05D001543 ORTHO05D001722 3.4e-09 65.5 88 44.3
Sc02g0003200 Simmondsia chinensis HOM05D001543 ORTHO05D001722 3.4e-09 65.5 41 73.2
CANSAT25G3262 Cannabis sativa HOM05D001543 ORTHO05D001722 4.5e-09 65.1 41 68.3
CiPaw.14G018300 Carya illinoinensis HOM05D001543 ORTHO05D001722 4.5e-09 65.1 39 74.4
Sed0004335 Sechium edule HOM05D001543 ORTHO05D001722 4.5e-09 65.1 41 70.7
CiPaw.13G024300 Carya illinoinensis HOM05D001543 ORTHO05D001722 5.8e-09 64.7 41 68.3
ClCG05G003050 Citrullus lanatus HOM05D001543 ORTHO05D001722 5.8e-09 64.7 41 70.7
Dinv24173 Davidia involucrata HOM05D001543 ORTHO05D001722 5.8e-09 64.7 90 45.6
PGSC0003DMG400006467 Solanum tuberosum HOM05D001543 ORTHO05D001722 5.8e-09 64.7 41 70.7
CDE04G2807 Ceratophyllum demersum HOM05D001543 ORTHO05D001722 9.9e-09 63.9 40 70.0
CDE12G0756 Ceratophyllum demersum HOM05D001543 ORTHO05D001722 9.9e-09 63.9 41 68.3
HanXRQChr01g0019921 Helianthus annuus HOM05D001543 ORTHO05D001722 9.9e-09 63.9 41 70.7
QL04p028571 Quercus lobata HOM05D001543 ORTHO05D001722 9.9e-09 63.9 41 68.3
CSS0014924 Camellia sinensis var. sinensis HOM05D001543 ORTHO05D001722 1.3e-08 63.5 41 68.3
PSO063G5496 Papaver somniferum HOM05D001543 ORTHO05D001722 1.3e-08 63.5 79 48.1
PGSC0003DMG400007594 Solanum tuberosum HOM05D001543 ORTHO05D001722 1.3e-08 63.5 41 68.3
Dinv43601 Davidia involucrata HOM05D001543 ORTHO05D001722 1.7e-08 63.2 41 68.3
Eucgr.D01204 Eucalyptus grandis HOM05D001543 ORTHO05D001722 1.7e-08 63.2 40 67.5
Peaxi162Scf00853g00434 Petunia axillaris HOM05D001543 ORTHO05D001722 1.7e-08 63.2 41 68.3
Sabra14G0038600 Salix brachista HOM05D001543 ORTHO05D001722 1.7e-08 63.2 40 70.0
Sopen01g035640 Solanum pennellii HOM05D001543 ORTHO05D001722 1.7e-08 63.2 41 68.3
PGSC0003DMG400001694 Solanum tuberosum HOM05D001543 ORTHO05D001722 1.7e-08 63.2 41 68.3
SGA_v2.0_scaffold52G19257 Striga asiatica HOM05D001543 ORTHO05D001722 1.7e-08 63.2 95 42.1
TAR636G0309 Trochodendron aralioides HOM05D001543 ORTHO05D001722 1.7e-08 63.2 41 65.9
GSVIVG01018314001 Vitis vinifera HOM05D001543 ORTHO05D001722 1.7e-08 63.2 71 54.9
EL10Ac1g00738 Beta vulgaris HOM05D001543 ORTHO05D001722 2.2e-08 62.8 38 76.3
TWI23G1103 Tripterygium wilfordii HOM05D001543 ORTHO05D001722 2.2e-08 62.8 60 50.0
ATR0665G561 Amborella trichopoda HOM05D001543 ORTHO05D001722 2.9e-08 62.4 41 68.3
Cfa005660 Carpinus fangiana HOM05D001543 ORTHO05D001722 2.9e-08 62.4 51 58.8
Haze_10583 Corylus avellana HOM05D001543 ORTHO05D001722 2.9e-08 62.4 51 58.8
Migut.B01504 Erythranthe guttata HOM05D001543 ORTHO05D001722 2.9e-08 62.4 41 68.3
Hma1.2p1_1882F.1_g306400 Hydrangea macrophylla HOM05D001543 ORTHO05D001722 2.9e-08 62.4 41 65.9
PGR004G2018 Punica granatum HOM05D001543 ORTHO05D001722 2.9e-08 62.4 41 65.9
Sabra02G0108800 Salix brachista HOM05D001543 ORTHO05D001722 2.9e-08 62.4 64 51.6
THA.LOC104802502 Tarenaya hassleriana HOM05D001543 ORTHO05D001722 2.9e-08 62.4 96 40.6
Lalb_Chr12g0210441 Lupinus albus HOM05D001543 ORTHO05D001722 3.8e-08 62.0 58 53.4
ECA248G1955 Erigeron canadensis HOM05D001543 ORTHO05D001722 4.9e-08 61.6 39 71.8
Potri.014G051500 Populus trichocarpa HOM05D001543 ORTHO05D001722 4.9e-08 61.6 64 53.1
Atru.chr5.97 Acer truncatum HOM05D001543 ORTHO05D001722 6.4e-08 61.2 55 54.5
Lj9A553G38 Lonicera japonica HOM05D001543 ORTHO05D001722 6.4e-08 61.2 41 65.9
Nn1g05428 Nelumbo nucifera HOM05D001543 ORTHO05D001722 6.4e-08 61.2 39 69.2
Potri.002G139700 Populus trichocarpa HOM05D001543 ORTHO05D001722 6.4e-08 61.2 64 50.0
Rhsim01G0141800 Rhododendron simsii HOM05D001543 ORTHO05D001722 6.4e-08 61.2 41 65.9
QL11p022831 Quercus lobata HOM05D001543 ORTHO05D001722 8.4e-08 60.8 63 52.4
Solyc01g088800.4 Solanum lycopersicum HOM05D001543 ORTHO05D001722 8.4e-08 60.8 67 53.7
TAR381G0730 Trochodendron aralioides HOM05D001543 ORTHO05D001722 8.4e-08 60.8 41 68.3
Sabra14G0036500 Salix brachista HOM05D001543 ORTHO05D001722 1.1e-07 60.5 64 50.0
unitig_22.g5409 Utricularia gibba HOM05D001543 ORTHO05D001722 1.1e-07 60.5 115 42.6
Actinidia12638 Actinidia chinensis HOM05D001543 ORTHO05D001722 1.4e-07 60.1 74 48.6
Aqoxy6G00733 Aquilegia oxysepala HOM05D001543 ORTHO05D001722 1.4e-07 60.1 96 39.6
CiPaw.05G033300 Carya illinoinensis HOM05D001543 ORTHO05D001722 1.4e-07 60.1 94 41.5
AUR62013767 Chenopodium quinoa HOM05D001543 ORTHO05D001722 1.4e-07 60.1 37 73.0
AUR62023388 Chenopodium quinoa HOM05D001543 ORTHO05D001722 1.4e-07 60.1 37 73.0
AUR62043413 Chenopodium quinoa HOM05D001543 ORTHO05D001722 1.4e-07 60.1 37 73.0
Oeu024403.4 Olea europaea HOM05D001543 ORTHO05D001722 1.4e-07 60.1 41 65.9
arahy.Tifrunner.gnm1.ann1.B36Y9U Arachis hypogaea HOM05D001543 ORTHO05D001722 1.9e-07 59.7 41 65.9
arahy.Tifrunner.gnm1.ann1.SVU6LR Arachis hypogaea HOM05D001543 ORTHO05D001722 1.9e-07 59.7 41 65.9
Ca_02173_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 1.9e-07 59.7 75 52.0
Hund17112 Selenicereus undatus HOM05D001543 ORTHO05D001722 1.9e-07 59.7 77 46.8
Ciclev10018944m.g Citrus clementina HOM05D001543 ORTHO05D001722 2.4e-07 59.3 63 49.2
Lalb_Chr07g0195281 Lupinus albus HOM05D001543 ORTHO05D001722 2.4e-07 59.3 41 63.4
TAR374G0507 Trochodendron aralioides HOM05D001543 ORTHO05D001722 2.4e-07 59.3 40 62.5
COL.COLO4_12374 Corchorus olitorius HOM05D001543 ORTHO05D001722 3.2e-07 58.9 88 42.0
Lsat_1_v5_gn_1_84160 Lactuca sativa HOM05D001543 ORTHO05D001722 3.2e-07 58.9 38 71.1
PSO782G5099 Papaver somniferum HOM05D001543 ORTHO05D001722 3.2e-07 58.9 75 48.0
Haze_02878 Corylus avellana HOM05D001543 ORTHO05D001722 4.2e-07 58.5 37 70.3
Gohir.D11G079400 Gossypium hirsutum HOM05D001543 ORTHO05D001722 4.2e-07 58.5 53 54.7
Ca_14794_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 5.5e-07 58.2 41 63.4
Dinv44039 Davidia involucrata HOM05D001543 ORTHO05D001722 5.5e-07 58.2 102 39.2
Duzib138G1252 Durio zibethinus HOM05D001543 ORTHO05D001722 5.5e-07 58.2 65 46.2
Gorai.007G085100 Gossypium raimondii HOM05D001543 ORTHO05D001722 5.5e-07 58.2 63 47.6
MBI04_g38565_MAGBIO Magnolia biondii HOM05D001543 ORTHO05D001722 5.5e-07 58.2 37 70.3
Oeu018078.2 Olea europaea HOM05D001543 ORTHO05D001722 5.5e-07 58.2 38 71.1
SGA_v2.0_scaffold340G49337 Striga asiatica HOM05D001543 ORTHO05D001722 5.5e-07 58.2 76 48.7
TPR.G32125 Trifolium pratense HOM05D001543 ORTHO05D001722 5.5e-07 58.2 41 63.4
DCAR_029504 Daucus carota HOM05D001543 ORTHO05D001722 7.1e-07 57.8 75 48.0
Duzib133G1142 Durio zibethinus HOM05D001543 ORTHO05D001722 7.1e-07 57.8 97 39.2
Gohir.A11G074600 Gossypium hirsutum HOM05D001543 ORTHO05D001722 7.1e-07 57.8 109 39.4
MBI05_g05611_MAGBIO Magnolia biondii HOM05D001543 ORTHO05D001722 7.1e-07 57.8 41 63.4
Peaxi162Scf00103g01116 Petunia axillaris HOM05D001543 ORTHO05D001722 7.1e-07 57.8 38 68.4
SalBow5G2614 Salvia bowleyana HOM05D001543 ORTHO05D001722 7.1e-07 57.8 75 48.0
Solyc10g062340.2 Solanum lycopersicum HOM05D001543 ORTHO05D001722 7.1e-07 57.8 37 75.7
TAR625G0137 Trochodendron aralioides HOM05D001543 ORTHO05D001722 7.1e-07 57.8 101 42.6
Glyma.03G107700 Glycine max HOM05D001543 ORTHO05D001722 9.3e-07 57.4 41 63.4
Glyma.09G245000 Glycine max HOM05D001543 ORTHO05D001722 9.3e-07 57.4 47 55.3
TPR.G25979 Trifolium pratense HOM05D001543 ORTHO05D001722 9.3e-07 57.4 38 71.1
VMungo0331G0452 Vigna mungo HOM05D001543 ORTHO05D001722 9.3e-07 57.4 41 63.4
Zm00001eb075060 Zea mays HOM05D001543 ORTHO05D001722 9.3e-07 57.4 63 52.4
FvH4_7g09210 Fragaria vesca HOM05D001543 ORTHO05D001722 1.2e-06 57.0 38 68.4
FAN01G1148 Fragaria x ananassa HOM05D001543 ORTHO05D001722 1.2e-06 57.0 38 68.4
Nitab4.5_0000563g0160 Nicotiana tabacum HOM05D001543 ORTHO05D001722 1.2e-06 57.0 37 70.3
Nitab4.5_0004425g0010 Nicotiana tabacum HOM05D001543 ORTHO05D001722 1.2e-06 57.0 37 70.3
RcHm_v2.0_Chr1g0345261 Rosa chinensis HOM05D001543 ORTHO05D001722 1.2e-06 57.0 38 68.4
Thecc.01G400300 Theobroma cacao HOM05D001543 ORTHO05D001722 1.2e-06 57.0 79 45.6
Glyma.18G248200 Glycine max HOM05D001543 ORTHO05D001722 1.6e-06 56.6 59 47.5
VMungo1383G3467 Vigna mungo HOM05D001543 ORTHO05D001722 1.6e-06 56.6 64 48.4
Cc02_g25380 Coffea canephora HOM05D001543 ORTHO05D001722 2.1e-06 56.2 35 74.3
MD02G1220200 Malus domestica HOM05D001543 ORTHO05D001722 2.1e-06 56.2 54 55.6
vmacro21069 Vaccinium macrocarpon HOM05D001543 ORTHO05D001722 2.1e-06 56.2 75 45.3
Gohir.D11G079300 Gossypium hirsutum HOM05D001543 ORTHO05D001722 2.7e-06 55.8 76 43.4
Phvul.010G044700 Phaseolus vulgaris HOM05D001543 ORTHO05D001722 2.7e-06 55.8 41 61.0
Sopen00g003100 Solanum pennellii HOM05D001543 ORTHO05D001722 2.7e-06 55.8 34 79.4
CARHR139930 Cardamine hirsuta HOM05D001543 ORTHO05D001722 3.5e-06 55.5 74 41.9
FAN03G0838 Fragaria x ananassa HOM05D001543 ORTHO05D001722 3.5e-06 55.5 37 67.6
FAN06G2038 Fragaria x ananassa HOM05D001543 ORTHO05D001722 3.5e-06 55.5 37 67.6
FAN10G3183 Fragaria x ananassa HOM05D001543 ORTHO05D001722 3.5e-06 55.5 37 67.6
Lj1g0023999 Lotus japonicus HOM05D001543 ORTHO05D001722 3.5e-06 55.5 39 66.7
Sed0010571 Sechium edule HOM05D001543 ORTHO05D001722 3.5e-06 55.5 119 35.3
Duzib147G1203 Durio zibethinus HOM05D001543 ORTHO05D001722 4.6e-06 55.1 91 45.1
Medtr8g007390 Medicago truncatula HOM05D001543 ORTHO05D001722 4.6e-06 55.1 73 47.9
Zm00001eb118580 Zea mays HOM05D001543 ORTHO05D001722 4.6e-06 55.1 38 65.8
Zm00001eb427780 Zea mays HOM05D001543 ORTHO05D001722 4.6e-06 55.1 38 65.8
Gohir.A11G074700 Gossypium hirsutum HOM05D001543 ORTHO05D001722 6.0e-06 54.7 118 33.1
HanXRQChr11g0333721 Helianthus annuus HOM05D001543 ORTHO05D001722 6.0e-06 54.7 41 58.5
Lalb_Chr19g0126391 Lupinus albus HOM05D001543 ORTHO05D001722 6.0e-06 54.7 147 32.0
Medtr7g081210 Medicago truncatula HOM05D001543 ORTHO05D001722 6.0e-06 54.7 38 65.8
TWI59G0607 Tripterygium wilfordii HOM05D001543 ORTHO05D001722 6.0e-06 54.7 36 63.9
GSVIVG01015774001 Vitis vinifera HOM05D001543 ORTHO05D001722 6.0e-06 54.7 52 53.8
AL4G43770 Arabidopsis lyrata HOM05D001543 ORTHO05D001722 7.9e-06 54.3 41 58.5
Carub.0004s2727 Capsella rubella HOM05D001543 ORTHO05D001722 7.9e-06 54.3 55 50.9
Glyma.07G119000 Glycine max HOM05D001543 ORTHO05D001722 7.9e-06 54.3 74 45.9
PGSC0003DMG400003302 Solanum tuberosum HOM05D001543 ORTHO05D001722 7.9e-06 54.3 33 78.8


User provided reference genes

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