Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.1e-67 258.8 124 100.0
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 8.5e-21 104.0 85 51.8
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.1e-20 103.6 85 51.8
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 3.2e-20 102.1 85 50.6
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 3.6e-19 98.6 85 49.4
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.0e-18 97.1 85 50.6
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.4e-18 96.7 85 51.8
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.4e-18 96.7 85 50.6
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.4e-18 96.7 85 50.6
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.4e-18 96.7 85 50.6
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.8e-18 96.3 89 48.3
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.0e-18 95.5 85 49.4
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.0e-18 95.5 85 48.2
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.0e-18 95.1 85 48.2
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.0e-18 95.1 82 50.0
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 4.0e-18 95.1 85 49.4
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 4.0e-18 95.1 85 50.6
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.2e-18 94.7 85 49.4
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 5.2e-18 94.7 86 50.0
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 6.8e-18 94.4 85 48.2
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 6.8e-18 94.4 85 48.2
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 6.8e-18 94.4 85 45.9
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 6.8e-18 94.4 85 48.2
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 8.8e-18 94.0 85 50.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 8.8e-18 94.0 85 50.6
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.5e-17 93.2 85 45.9
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.6e-17 92.4 85 45.9
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.6e-17 92.4 85 48.2
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.4e-17 92.0 85 51.8
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.4e-17 92.0 85 47.1
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 5.7e-17 91.3 85 45.9
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 5.7e-17 91.3 85 49.4
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 7.5e-17 90.9 85 48.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.5e-17 90.9 85 45.9
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 7.5e-17 90.9 85 48.2
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 9.8e-17 90.5 85 45.9
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.7e-16 89.7 85 47.1
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.7e-16 89.7 85 45.9
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.7e-16 89.7 85 49.4
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.7e-16 89.7 85 45.9
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.7e-16 89.7 85 49.4
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.2e-16 89.4 85 44.7
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 2.2e-16 89.4 85 47.1
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.2e-16 89.4 84 46.4
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.2e-16 89.4 82 48.8
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.2e-16 89.4 85 47.1
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.2e-16 89.4 85 42.4
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.8e-16 89.0 85 49.4
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.8e-16 89.0 85 44.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.7e-16 88.6 85 48.2
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.7e-16 88.6 85 49.4
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.7e-16 88.6 85 43.5
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.7e-16 88.6 85 45.9
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 3.7e-16 88.6 85 45.9
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 4.8e-16 88.2 85 44.7
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 4.8e-16 88.2 85 45.9
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.3e-16 87.8 85 48.2
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 6.3e-16 87.8 85 45.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 8.3e-16 87.4 85 47.1
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 8.3e-16 87.4 85 43.5
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.1e-15 87.0 85 42.4
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.4e-15 86.7 85 47.1
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.4e-15 86.7 85 47.1
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.4e-15 85.9 85 45.9
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.4e-15 85.9 85 47.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.4e-15 85.9 85 44.7
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.1e-15 85.5 85 47.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 4.1e-15 85.1 85 42.4
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 5.4e-15 84.7 85 42.4
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 5.4e-15 84.7 85 45.9
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.4e-15 84.7 85 43.5
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 5.4e-15 84.7 85 43.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 7.0e-15 84.3 98 43.9
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 7.0e-15 84.3 85 44.7
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 7.0e-15 84.3 77 49.4
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 9.1e-15 84.0 85 43.5
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.1e-15 84.0 85 44.7
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.6e-14 83.2 86 45.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.6e-14 83.2 85 38.8
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 2.0e-14 82.8 85 43.5
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.5e-14 81.6 85 43.5
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 7.7e-14 80.9 85 41.2
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 7.7e-14 80.9 85 40.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.0e-13 80.5 85 38.8
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 2.2e-13 79.3 85 40.0
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.9e-13 79.0 85 40.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 3.8e-13 78.6 85 38.8
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.0e-13 78.2 85 40.0
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 5.0e-13 78.2 85 47.1
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 8.5e-13 77.4 85 42.4
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 8.5e-13 77.4 85 42.4
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 8.5e-13 77.4 85 43.5
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.1e-12 77.0 81 40.7
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.1e-12 77.0 85 41.2
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.5e-12 76.6 74 41.9
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.9e-12 76.3 83 41.0
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.2e-12 75.5 85 43.5
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 3.2e-12 75.5 84 46.4
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 4.2e-12 75.1 85 41.2
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 7.2e-12 74.3 85 40.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 9.4e-12 73.9 85 40.0
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 9.4e-12 73.9 81 44.4
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 9.4e-12 73.9 78 43.6
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 9.4e-12 73.9 85 40.0
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.2e-11 73.6 85 40.0
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.2e-11 73.6 85 40.0
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.6e-11 73.2 85 41.2
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.6e-11 73.2 85 41.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.6e-11 73.2 99 32.3
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 2.7e-11 72.4 85 37.6
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 4.7e-11 71.6 77 48.1
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.4e-10 70.1 85 38.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.8e-10 69.7 85 41.2
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.8e-10 69.7 85 41.2
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.8e-10 69.7 85 41.2
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 4.4e-09 65.1 91 31.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 2.2e-08 62.8 45 55.6
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 5.4e-07 58.2 85 38.8


User provided reference genes

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