Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.1e-65 253.1 118 100.0
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 7.1e-25 117.5 55 100.0
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 4.6e-16 88.2 94 48.9
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 6.0e-16 87.8 97 46.4
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 6.7e-15 84.3 70 57.1
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.5e-14 83.2 51 70.6
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 2.5e-14 82.4 54 64.8
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.3e-14 82.0 77 54.5
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 3.3e-14 82.0 51 68.6
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 4.3e-14 81.6 53 66.0
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 4.3e-14 81.6 53 66.0
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 7.4e-14 80.9 53 62.3
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 7.4e-14 80.9 49 67.3
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.3e-13 80.1 49 69.4
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.3e-13 80.1 49 67.3
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.3e-13 80.1 49 67.3
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.3e-13 80.1 49 69.4
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.3e-13 80.1 53 66.0
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 1.6e-13 79.7 53 64.2
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.6e-13 79.7 49 69.4
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.6e-13 79.7 48 64.6
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 2.1e-13 79.3 53 67.9
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 2.1e-13 79.3 53 67.9
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 2.1e-13 79.3 63 60.3
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.8e-13 79.0 78 48.7
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.8e-13 79.0 49 67.3
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 3.7e-13 78.6 51 64.7
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 4.8e-13 78.2 51 62.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 4.8e-13 78.2 49 65.3
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 4.8e-13 78.2 96 43.8
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 6.2e-13 77.8 51 64.7
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 6.2e-13 77.8 51 62.7
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 6.2e-13 77.8 51 66.7
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 6.2e-13 77.8 65 56.9
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 6.2e-13 77.8 54 61.1
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 6.2e-13 77.8 53 66.0
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 8.1e-13 77.4 78 47.4
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 8.1e-13 77.4 51 66.7
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.1e-12 77.0 53 60.4
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 1.1e-12 77.0 49 63.3
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.1e-12 77.0 49 65.3
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.4e-12 76.6 51 62.7
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.4e-12 76.6 53 60.4
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.4e-12 76.6 69 53.6
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.4e-12 76.6 54 59.3
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.8e-12 76.3 78 46.2
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.8e-12 76.3 49 63.3
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 1.8e-12 76.3 49 65.3
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 2.4e-12 75.9 58 58.6
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 3.1e-12 75.5 51 60.8
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 3.1e-12 75.5 54 61.1
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 3.1e-12 75.5 53 64.2
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 3.1e-12 75.5 53 62.3
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 4.0e-12 75.1 52 59.6
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 4.0e-12 75.1 52 63.5
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 4.0e-12 75.1 51 60.8
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 4.0e-12 75.1 48 66.7
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 5.3e-12 74.7 58 58.6
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 5.3e-12 74.7 51 66.7
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 6.9e-12 74.3 50 62.0
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 9.0e-12 73.9 53 60.4
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 9.0e-12 73.9 48 64.6
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 9.0e-12 73.9 67 55.2
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 9.0e-12 73.9 53 64.2
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 9.0e-12 73.9 54 59.3
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 1.2e-11 73.6 51 58.8
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.5e-11 73.2 51 62.7
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 2.0e-11 72.8 52 57.7
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.0e-11 72.8 51 60.8
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 2.6e-11 72.4 53 62.3
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.6e-11 72.4 49 63.3
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 3.4e-11 72.0 60 60.0
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 3.4e-11 72.0 60 60.0
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 3.4e-11 72.0 47 66.0
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 4.5e-11 71.6 51 60.8
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 5.8e-11 71.2 53 58.5
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.8e-11 71.2 53 58.5
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 5.8e-11 71.2 49 61.2
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 7.6e-11 70.9 53 60.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 7.6e-11 70.9 57 59.6
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 9.9e-11 70.5 53 56.6
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.3e-10 70.1 58 55.2
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.3e-10 70.1 48 62.5
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 1.3e-10 70.1 48 62.5
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 1.3e-10 70.1 52 57.7
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.7e-10 69.7 54 59.3
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.7e-10 69.7 50 66.0
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 2.9e-10 68.9 60 56.7
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 4.9e-10 68.2 60 56.7
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 8.4e-10 67.4 52 59.6
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 8.4e-10 67.4 51 58.8
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.9e-09 66.2 51 56.9
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.9e-09 66.2 63 47.6
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 3.2e-09 65.5 50 60.0
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 4.2e-09 65.1 50 58.0
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.6e-08 63.2 51 56.9


User provided reference genes

Program Settings