Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 0.0e+00 2561.9 1289 100.0
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1291.2 1298 54.4
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1288.5 1296 54.4
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1278.8 1305 53.8
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1277.7 1296 53.4
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1277.3 1294 53.3
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1275.0 1304 53.8
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1264.2 1298 53.5
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1264.2 1304 53.5
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1261.5 1284 53.1
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1260.4 1295 52.6
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1260.0 1294 52.8
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1255.0 1292 52.9
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1254.2 1294 52.7
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1251.9 1294 52.3
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1250.7 1300 53.1
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1250.7 1301 51.9
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1250.7 1298 52.5
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1250.0 1188 56.6
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1248.8 1299 52.7
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1244.6 1303 52.5
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1244.6 1242 54.0
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1238.8 1295 51.9
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1238.0 1296 52.2
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1234.9 1294 52.3
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1231.5 1304 52.0
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1231.1 1298 51.8
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1230.7 1349 51.2
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1229.9 1298 51.4
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1229.9 1302 51.6
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1228.4 1296 51.3
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1227.2 1296 51.5
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1225.7 1296 51.5
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1224.5 1298 52.4
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1224.2 1294 51.5
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1221.1 1298 50.5
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1219.5 1304 50.5
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1217.6 1304 51.9
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1217.6 1299 50.8
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1217.2 1295 51.7
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1215.7 1302 50.5
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 0.0e+00 1213.4 1102 57.8
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1213.0 1298 51.6
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1212.2 1293 51.8
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1210.7 1300 50.8
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1210.7 1295 51.7
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1208.7 1296 51.7
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1207.6 1302 51.2
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1206.0 1295 51.7
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1204.9 1293 51.2
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1204.1 1301 51.6
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1203.0 1312 49.6
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1202.2 1302 50.6
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1199.9 1298 51.3
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1199.5 1320 49.5
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1198.7 1297 51.0
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1196.8 1306 50.7
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1194.9 1295 51.2
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1194.9 1294 51.2
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 0.0e+00 1194.9 1335 48.9
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1192.6 1295 51.4
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1192.6 1250 51.7
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1192.2 1300 51.3
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1191.0 1295 51.2
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1190.6 1303 50.2
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1189.9 1297 51.7
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1189.1 1296 50.8
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1188.7 1300 50.2
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1187.6 1290 50.9
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1186.0 1298 51.2
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1184.9 1293 50.8
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1184.1 1294 50.8
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1182.5 1300 51.0
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1182.5 1299 50.7
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 0.0e+00 1180.6 1296 51.4
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1177.9 1294 49.6
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1174.8 1289 50.1
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1172.5 1297 48.7
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1172.1 1297 48.7
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 0.0e+00 1169.8 1331 48.5
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1168.3 1300 51.1
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 0.0e+00 1168.3 1297 50.9
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1166.4 1297 50.4
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1164.1 1323 49.6
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1157.1 1301 48.8
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 0.0e+00 1156.7 1292 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 0.0e+00 1154.0 1290 49.6
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 0.0e+00 1152.5 1297 50.0
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1152.5 1333 49.5
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1151.0 1294 49.2
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1149.0 1374 47.9
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1142.9 1297 49.9
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1140.9 1176 53.0
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1140.6 1316 48.2
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1140.2 1326 48.6
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1124.0 1294 48.8
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 0.0e+00 1121.7 1182 51.4
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1120.1 1297 49.4
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1118.6 1294 49.1
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 0.0e+00 1111.3 1293 49.3
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1110.9 1265 49.7
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1110.5 1246 50.2
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1104.0 1298 48.6
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 0.0e+00 1083.9 1375 47.0
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 1.3e-308 1063.5 1299 47.1
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 2.1e-308 1062.8 1191 49.0
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 6.5e-305 1051.2 1232 46.6
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 1.9e-304 1049.7 1156 50.0
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 1.9e-304 1049.7 1223 47.9
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 8.7e-302 1040.8 1362 45.6
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 1.1e-291 1007.3 1288 45.7
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 2.9e-281 972.6 969 51.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.4e-280 970.3 1220 45.2
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 2.6e-269 932.9 1293 42.8
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 9.7e-269 931.0 1119 47.1
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.3e-233 814.3 666 62.0
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.5e-229 800.8 1339 36.5
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 1.6e-218 764.2 1372 36.1
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 5.6e-216 755.7 1293 40.1
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 9.0e-198 695.3 1142 37.8
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 2.9e-172 610.5 932 39.8
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 7.7e-165 585.9 862 40.4
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 2.5e-163 580.9 500 59.6
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 6.3e-159 566.2 841 39.0
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.3e-148 531.9 386 71.2
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 6.3e-143 513.1 947 34.2
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 2.3e-121 441.4 809 38.1
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.3e-121 441.4 682 38.9
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 7.1e-118 429.9 820 37.1
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 5.8e-104 383.6 593 39.0
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.2e-93 349.4 660 36.1
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 3.7e-82 311.2 194 79.9
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 5.1e-76 290.8 272 54.8
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 2.5e-75 288.5 179 79.3
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.6e-69 269.2 416 43.3
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 9.7e-67 260.0 301 51.5
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 1.1e-65 256.5 302 52.0
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 2.8e-50 205.3 137 75.9
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-49 203.0 739 27.1
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 4.2e-46 191.4 291 43.0
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 8.0e-45 187.2 152 64.5
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 2.8e-42 178.7 320 38.4
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 3.5e-40 171.8 173 54.9
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 1.4e-36 159.8 100 83.0
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 2.6e-35 155.6 178 46.6
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 3.7e-34 151.8 132 62.9
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 3.2e-30 138.7 166 46.4
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 9.1e-25 120.6 112 55.4
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 3.5e-24 118.6 68 85.3
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 1.7e-23 116.3 126 50.8
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 4.3e-22 111.7 68 77.9
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 9.8e-19 100.5 201 32.3
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 3.7e-18 98.6 75 57.3
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 1.2e-16 93.6 153 35.3
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 3.6e-13 82.0 145 31.0
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 4.7e-13 81.6 111 38.7
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-12 80.1 52 73.1
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 5.2e-12 78.2 62 56.5
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 5.8e-11 74.7 149 32.2
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 3.7e-10 72.0 82 41.5
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 7.0e-09 67.8 83 45.8
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 3.5e-08 65.5 65 52.3
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 1.7e-07 63.2 61 54.1
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 3.9e-07 62.0 53 58.5
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 6.6e-07 61.2 52 57.7
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 4.3e-06 58.5 112 31.2
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 5.6e-06 58.2 91 33.0
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 5.6e-06 58.2 91 34.1
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 7.3e-06 57.8 71 36.6


User provided reference genes

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